View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_2 (Length: 865)
Name: NF11543_low_2
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 293 - 622
Target Start/End: Original strand, 53983412 - 53983744
Alignment:
| Q |
293 |
atataacaaccatctgtcttgatctctggcnnnnnnngaatgaatttgtttcattgtaaaaaccaaaactccaacaacacccgcaaagaaagataagaca |
392 |
Q |
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| T |
53983412 |
atataacaaccatctgtcttgatctctggcttttttttaatgaatttgtttcattgtaaaaaccaaaactccaacaacacccgcaaagaaagataagaca |
53983511 |
T |
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| Q |
393 |
taaagctcgaggaggcttgcataatgacaaactcttgatcatcccttgcaccaaattttgccaaataattttatacatcttaccttcaagaatagtattt |
492 |
Q |
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| T |
53983512 |
taaagctggaggaggcttgcataatgacaaactcttgatcatcccttgcaccaaattttgccaaataattttatacatcttaccttcaagaatagtattt |
53983611 |
T |
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| Q |
493 |
tattctttggaaatcttcacctgctttctaa---gagatcattttcatttcttaaaagtaaggaatgactctacttaaaaattaaagagatactcacaaa |
589 |
Q |
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| T |
53983612 |
tattctttggaaatcttcacctgctttctaagttgagatcattttcatttcttaaaagtaaggaatgactctacttaaaaattaaagagatactcacaaa |
53983711 |
T |
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| Q |
590 |
aactagataatgagtcacgttatcaaacaattc |
622 |
Q |
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| T |
53983712 |
aactagataatgagtcacgttatcaaacaattc |
53983744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 53983099 - 53983356
Alignment:
| Q |
18 |
cattcttgatctgaattttctttgctttgttgtgtgaaattgttgttatatgatgatttttcgcacttaattgtgtgcataattcttccattagttgagt |
117 |
Q |
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| T |
53983099 |
cattcttgctctgaattttctttgctttgttgtgtgaaattgttgttatatgatgatttttcgcacttaattgtgtgcataattcttccattagttgagt |
53983198 |
T |
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| Q |
118 |
tttttatgcacatttgagtgattttaaaattcaattgtttttgaaatatttctagaagttcatagtgttgaccatcatcttcataactttgtaggtttta |
217 |
Q |
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| T |
53983199 |
tttttatgcacatttgagtgattttaaaattcaattgtttttgaaatatttctagaagttcatagtgttgaccatcatcttcataactttgtaggtttta |
53983298 |
T |
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| Q |
218 |
accgtagctaatcaaacaccacttaataacaatttcttgtagtgtcgtttaaaccatt |
275 |
Q |
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| T |
53983299 |
accgttgctaatcaaacaccacttaataacaatttcttgtagtgtcgtttaaaccatt |
53983356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 680 - 857
Target Start/End: Original strand, 53983780 - 53983958
Alignment:
| Q |
680 |
atctatctcaatttaaatggagtcctaacatgcacccccgaccctttccaaaatgttcaagttctagtggatcttatacatcttttgttgcgaaattggc |
779 |
Q |
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| T |
53983780 |
atctatctcaatttaaatggagtccttacatgcacccccgaccctttccaaaatgttcaagttctagtggatcttatacatcttttgttgtgaaattggc |
53983879 |
T |
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| Q |
780 |
tgtttga-nnnnnnnnnnnnnnagattgaaataatccttgcagttggatccagataatttcatgctcactctctctgct |
857 |
Q |
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| T |
53983880 |
tgttttattttttattttttttagattgaaataatccttgtagttggatccagataatttcatgctcactctctttgct |
53983958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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