View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11543_low_20 (Length: 380)

Name: NF11543_low_20
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11543_low_20
NF11543_low_20
[»] chr1 (1 HSPs)
chr1 (20-369)||(47126615-47126964)
[»] chr5 (1 HSPs)
chr5 (266-335)||(9606270-9606339)
[»] chr7 (1 HSPs)
chr7 (248-327)||(46709155-46709234)
[»] chr8 (4 HSPs)
chr8 (273-345)||(6456151-6456223)
chr8 (275-345)||(6449686-6449756)
chr8 (281-341)||(7457984-7458044)
chr8 (281-341)||(7470386-7470446)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 47126615 - 47126964
Alignment:
Q  20 aatcgcctaaatgctgccaatggttcagcgtctgcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaactt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47126615 aatcgcctaaatgctgccaatggttcagcgtctgcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaactt 47126714  T
Q  120 ctatcaatgacacaccaagaagagtttggaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47126715 ctatcaatgacacaccaagaagagtttggaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtacc 47126814  T
Q  220 ttgctcaggcataaacctacgactaaccgttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47126815 ttgctcaggcataaacctacgactaaccgttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagcc 47126914  T
Q  320 acccatatgataatggtgcaagattgtatgagatcgattcttgtcttcat 369  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47126915 acccatataataatggtgcaagattgtatgagatcgattcttgtcttcat 47126964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 9606339 - 9606270
Alignment:
Q  266 taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatgg 335  Q
    |||||| ||||||| ||||||||||| || ||||||||||||| |||||||||   ||||||||||||||    
T  9606339 taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg 9606270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 46709155 - 46709234
Alignment:
Q  248 gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat 327  Q
    |||||||| ||||||  |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | ||||||    
T  46709155 gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 46709234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 6456151 - 6456223
Alignment:
Q  273 cataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg 345  Q
    ||||||| || ||||||||||| || |||||||||| ||| |||||   |||||||||||||| |||||||||    
T  6456151 cataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattg 6456223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 6449686 - 6449756
Alignment:
Q  275 taagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg 345  Q
    ||||| |||||||| || || ||||||||||||| |||||||||   |||||| ||||||| |||||||||    
T  6449686 taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattg 6449756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 7457984 - 7458044
Alignment:
Q  281 tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag 341  Q
    ||||||||||| || |||||||||||||  || ||||| | |||||||| |||||||||||    
T  7457984 tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag 7458044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 7470386 - 7470446
Alignment:
Q  281 tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag 341  Q
    ||||||||||| || |||||||||||||  || ||||| | |||||||| |||||||||||    
T  7470386 tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag 7470446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University