View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_23 (Length: 320)
Name: NF11543_low_23
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_23 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30666 - 30427
Alignment:
| Q |
1 |
atagatatttcagcataaactagtcataactattattagtagaaaaacactaatgactattttacagccgaccctgagagaactttgtcgttaaactctt |
100 |
Q |
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| T |
30666 |
atagatatttcagcataa-ctagtcataactattattagtaaaaaaacactaatgactattttacaatcgaccctgagagaactttatctcttgagg-tt |
30569 |
T |
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| Q |
101 |
atcac--taagctaacacctttatggcgttatgtaattcaatggaagctaattagagatgataagataagaaaaaattacataattagaaagcgctattt |
198 |
Q |
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| T |
30568 |
atgacgttaagctaacacctt-atggcattatgtaattcaatggaagctaattagagatgataagataagaaaaaagtacataattagaaagcgctattt |
30470 |
T |
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| Q |
199 |
gtgaaggcgaaaccatttccactatcaaagtgactattgtttc |
241 |
Q |
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| T |
30469 |
gtgaaggtgaaatcatttccactatgaaagtgactgttgtttc |
30427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 65704 - 65596
Alignment:
| Q |
194 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctactacatacattggttcaaaaaactgatcatg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
65704 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatg---ctacatacattggttcaaaaaactgatcatg |
65608 |
T |
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| Q |
294 |
agagggatagtt |
305 |
Q |
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| T |
65607 |
agagggatagtt |
65596 |
T |
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