View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11543_low_24 (Length: 310)
Name: NF11543_low_24
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_24 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 42016283 - 42015984
Alignment:
| Q |
11 |
cagagatagtaataaattacataataattgaaagatctaatccgaaatcgaactcattgaattattgcgtaggagaaccaaactaaaaatgaattaatat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42016283 |
cagagatagtaataaattacataataattgaaagatctaatccgaaatcgaactcattgaattattgcgtaggagaaccaaactaaaaatgaattaatat |
42016184 |
T |
|
| Q |
111 |
tgggtataggcaaggtgagggataacaaatacctgaataccttgctgtggctgtgcaactgcaacagctatccgacaagtaggacacctcactatcttcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42016183 |
tgggtataggcaaggtgagggataacaaatacctgaataccttgctgtggctgtgcaactgcaacagctatccgacaagtaggacacctcactatcttcc |
42016084 |
T |
|
| Q |
211 |
caaagggaacctgcaacaattcccataagtaaaaaatggttacaaaacaagtccaatttttgcaatatcagtgtcatgaaatgaagaactcaagagaaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42016083 |
caaagggaacctgcaacaattcccataagtaaaaaatggttacaaaacaagtccaatttttgcaatatcagtgtcatgaaatgaagaactcaagagaaac |
42015984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University