View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_28 (Length: 275)
Name: NF11543_low_28
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39809169 - 39809421
Alignment:
| Q |
1 |
ctgcagcgagagaaagtggtgatcatttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatcttcatcgtacatggct |
100 |
Q |
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| T |
39809169 |
ctgcagcgagagaaagtggtgatcatttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatcttcatcgtacatggct |
39809268 |
T |
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| Q |
101 |
taaggttgttgccactcgtaatacaagggaacgtagctcaagacttgagaacatgtgttggcgtatttggcatcttgctcgcaagaagaagaaggttttt |
200 |
Q |
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| T |
39809269 |
taaggttgttgccactcgtaatacaagggaacgtagctcaagacttgagaacatgtgttggcgtatttggcatcttgctcgcaagaagaagaaggttttt |
39809368 |
T |
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| Q |
201 |
atcattcaattattatcaaacttgattgccaattttcattcatcaacatacat |
253 |
Q |
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| T |
39809369 |
atcattcaattattatcaaacttgattgccaattttcattcatcaatatacat |
39809421 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 15794812 - 15794985
Alignment:
| Q |
24 |
catttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatcttcatcgtacatggcttaaggttgttgccactcgtaata |
123 |
Q |
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| T |
15794812 |
catttcaatccaacaaagtattttgtggaagaggttgtggcaagtgttgatgaatctgatttatatcgcacttgggttaaggtggttgcaacacgcaaca |
15794911 |
T |
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| Q |
124 |
caagggaacgtagctcaagacttgagaacatgtgttggcgtatttggcatcttgctcgcaagaagaagaaggtt |
197 |
Q |
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| T |
15794912 |
caagggaaagaagttcaaggttggagaacatgtgttggcgtatttggcatcttgcacgaaagaagaagcaggtt |
15794985 |
T |
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