View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11543_low_30 (Length: 262)

Name: NF11543_low_30
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11543_low_30
NF11543_low_30
[»] scaffold0009 (2 HSPs)
scaffold0009 (19-256)||(40477-40714)
scaffold0009 (19-254)||(33859-34091)
[»] chr5 (7 HSPs)
chr5 (128-206)||(19806889-19806967)
chr5 (144-208)||(17377359-17377423)
chr5 (82-206)||(25511072-25511196)
chr5 (131-206)||(1347935-1348010)
chr5 (129-180)||(20111942-20111993)
chr5 (144-208)||(17383724-17383788)
chr5 (142-206)||(19653900-19653964)
[»] chr6 (1 HSPs)
chr6 (141-205)||(16258450-16258514)
[»] chr2 (1 HSPs)
chr2 (141-186)||(15784653-15784698)
[»] chr3 (2 HSPs)
chr3 (141-205)||(32226556-32226620)
chr3 (141-205)||(32242030-32242094)


Alignment Details
Target: scaffold0009 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 40477 - 40714
Alignment:
Q  19 gtgcagatggggactcgtcttccaagtgnnnnnnntacttcatattacaaaagcttacctatatttgaaaacttaattgaacttcggttatcgtggactt 118  Q
    ||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40477 gtgcagatggggactcgtcttcctagtgaagaaaatacttcatattacaaaagcttacctatatttgaaaacttaattgaacttcggttatcgtggactt 40576  T
Q  119 cacgtgtcactcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttatcattcccatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40577 cacgtgtcactcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttatcattcccatg 40676  T
Q  219 gatagcagctataatttgatttttgtttgttcttctct 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40677 gatagcagctataatttgatttttgtttgttcttctct 40714  T

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Target: scaffold0009; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 33859 - 34091
Alignment:
Q  19 gtgcagatggggactcgtcttccaagtgnnnnnnntacttcatattacaaaagcttacctatatttgaaaacttaattgaacttcggttatcgtggactt 118  Q
    ||||||||||||||||||||||| | ||        |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33859 gtgcagatggggactcgtcttcccaatgaagaaaacacttcatattacaaaaacttgcctctatttgaaaacttaattgaacttcggttatcgtggactt 33958  T
Q  119 cacgtgtcactcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttatcattcccatg 218  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |  |||    
T  33959 cacgtgttactcatgactggagtgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttatcttgcttatg 34058  T
Q  219 gatagcagctataatttgatttttgtttgttcttct 254  Q
    |||   || ||||||||||||||| |||||||||||    
T  34059 gat---agttataatttgatttttctttgttcttct 34091  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 19806889 - 19806967
Alignment:
Q  128 ctcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgttt 206  Q
    ||||||| |||  ||||||| ||||||||||||| |||||||| ||||| ||||||||| | |||||||||||||||||    
T  19806889 ctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 19806967  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 17377359 - 17377423
Alignment:
Q  144 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 208  Q
    |||| |||||||||| ||||||||||| ||||||||||||||| | |||  ||||||||||||||    
T  17377359 ggtattgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtttat 17377423  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 25511196 - 25511072
Alignment:
Q  82 tttgaaaacttaattgaacttcggttatcgtggacttcacgtgtcactcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaa 181  Q
    |||||||||||||||||||||||| |||| |||  |   || | |||| |||||||||||||| || |||||||||||   ||| |||| |||||| ||     
T  25511196 tttgaaaacttaattgaacttcggatatcttggtttaatcgagacacttatgactggagtgagatactgaaaatgctcatcaatagtcccaaacttgaag 25511097  T
Q  182 ctctttcgattaaaaaggtttgttt 206  Q
    ||||||  ||| |||||||||||||    
T  25511096 ctctttacattgaaaaggtttgttt 25511072  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 1348010 - 1347935
Alignment:
Q  131 atgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgttt 206  Q
    |||| ||| ||||| || ||||||||||| |||||||||| |||||||||||||| || |||  ||||||||||||    
T  1348010 atgattggggtgagatagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 1347935  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 20111942 - 20111993
Alignment:
Q  129 tcatgactggagtgaggtaatgaaaatgctccagaattgtccgaaacttcaa 180  Q
    |||||||||| |||||||| |||||||||||||||| ||||| |||||||||    
T  20111942 tcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaa 20111993  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 17383724 - 17383788
Alignment:
Q  144 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 208  Q
    |||| |||||||||| ||||||||||| | ||||||||||||| | |||  ||||||||||||||    
T  17383724 ggtagtgaaaatgctacagaattgtcccatacttcaaactcttaccattctaaaggtttgtttat 17383788  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 19653964 - 19653900
Alignment:
Q  142 gaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgttt 206  Q
    ||||| ||||||||||| ||  ||||||| ||||||||| |||||   |||||||||||||||||    
T  19653964 gaggttatgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgttt 19653900  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 16258514 - 16258450
Alignment:
Q  141 tgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtt 205  Q
    ||||||| || |||||||||| ||||||||||||||||||| |||||| |||  |||||||||||    
T  16258514 tgaggtagtgcaaatgctccataattgtccgaaacttcaaagtctttcaatttcaaaggtttgtt 16258450  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 15784653 - 15784698
Alignment:
Q  141 tgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctt 186  Q
    ||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  15784653 tgaggtagtgaaaatgctacagaattgtccaaaacttcaagctctt 15784698  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 32226556 - 32226620
Alignment:
Q  141 tgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtt 205  Q
    ||||||| || ||||||||||  ||||||| ||||||||||||||| | |||  |||||||||||    
T  32226556 tgaggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 32242094 - 32242030
Alignment:
Q  141 tgaggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtt 205  Q
    ||||||| || ||||||||||  ||||||| || |||||||||||||| |||  |||||||||||    
T  32242094 tgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgtt 32242030  T

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