View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11543_low_33 (Length: 251)

Name: NF11543_low_33
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11543_low_33
NF11543_low_33
[»] chr4 (3 HSPs)
chr4 (9-235)||(21833428-21833654)
chr4 (41-157)||(53761012-53761128)
chr4 (55-101)||(7308309-7308355)
[»] chr1 (1 HSPs)
chr1 (64-179)||(19467623-19467738)
[»] chr6 (2 HSPs)
chr6 (70-179)||(6588459-6588568)
chr6 (41-172)||(6416809-6416940)
[»] chr3 (2 HSPs)
chr3 (35-172)||(51763583-51763720)
chr3 (41-172)||(13469857-13469988)
[»] chr7 (1 HSPs)
chr7 (51-164)||(10615440-10615553)
[»] chr5 (1 HSPs)
chr5 (70-179)||(28532580-28532689)
[»] chr8 (3 HSPs)
chr8 (55-108)||(17635904-17635957)
chr8 (35-108)||(18318891-18318964)
chr8 (35-108)||(18314885-18314958)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 21833654 - 21833428
Alignment:
Q  9 gagagatgaagcaatgcctgttcctcttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 108  Q
    ||||| |||||||||||||  ||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  21833654 gagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaagcttacaattctttagcaagtggaaaagagattga 21833555  T
Q  109 ctgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagagcttttaccccttcaacatagagaatgtacttttcactat 208  Q
     |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21833554 ttgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagagcttttaccccttcaacatagagaatgtacttttcaccat 21833455  T
Q  209 ataaggggtagccaagaatgtactttt 235  Q
    |||||||||| | ||||||||||||||    
T  21833454 ataaggggtatctaagaatgtactttt 21833428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 53761128 - 53761012
Alignment:
Q  41 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 140  Q
    ||||||| | ||||| |||| | |||| |||||| ||||||||||| |||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  53761128 gatcacagttaaacaagatgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaacctt 53761029  T
Q  141 tcggagtttgataagtg 157  Q
     |||||||||| |||||    
T  53761028 acggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 7308309 - 7308355
Alignment:
Q  55 atgatggcttcttcaagaagcttacaattctttaacaagtggaaaag 101  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  7308309 atgatggcctcttccagaagcttacaattcttaaacaagtggaaaag 7308355  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 19467738 - 19467623
Alignment:
Q  64 tcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtg 163  Q
    |||||||||||||||||||| || |||||||| ||||  ||||    | | ||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  19467738 tcttcaagaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtg 19467639  T
Q  164 aaagagcttttacccc 179  Q
    ||||||| | ||||||    
T  19467638 aaagagcctctacccc 19467623  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 6588568 - 6588459
Alignment:
Q  70 agaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagag 169  Q
    |||||||||||||| || |||||||||||||| |||||| |||| ||||| |||  ||||||||||||||| || ||||||| |||||| ||||| ||||    
T  6588568 agaagcttacaattgttgaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagag 6588469  T
Q  170 cttttacccc 179  Q
    | | ||||||    
T  6588468 cctgtacccc 6588459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 6416809 - 6416940
Alignment:
Q  41 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 140  Q
    ||||||||  |||||||||| ||||||| ||||||||||| || |  || || |||||||| |||||  ||||||  || || | |||||||||||| ||    
T  6416809 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaacttt 6416908  T
Q  141 tcggagtttgataagtgcaagtgaaagagctt 172  Q
     |||||||| | |||||||||||| |||||||    
T  6416909 gcggagtttaaaaagtgcaagtgatagagctt 6416940  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 51763720 - 51763583
Alignment:
Q  35 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagatt 134  Q
    ||||||||||||| |||||||||||| | ||||  ||||||||||| ||   ||  | ||||||||| |||||| ||||||||||  ||||||||| |||    
T  51763720 ttatttgatcacagtcaaacatgatgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaatt 51763621  T
Q  135 aacctttcggagtttgataagtgcaagtgaaagagctt 172  Q
    |||||| || ||||||| ||| ||||||||||| ||||    
T  51763620 aaccttacgcagtttgaaaagagcaagtgaaagtgctt 51763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 13469988 - 13469857
Alignment:
Q  41 gatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctt 140  Q
    ||||||||  |||||||||| ||||||| ||||||||||| || |  || ||||||||||| ||| |  ||||||| || || | |||||||||||||||    
T  13469988 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaacctt 13469889  T
Q  141 tcggagtttgataagtgcaagtgaaagagctt 172  Q
     |||||||| | |||||||||||| |||||||    
T  13469888 gcggagtttaaaaagtgcaagtgatagagctt 13469857  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 10615440 - 10615553
Alignment:
Q  51 aaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttg 150  Q
    ||||| |||| | ||||||||||||||||| || |  | |||||||| ||| |||||| |||||||| | || | ||||||||||||||| ||||||||     
T  10615440 aaacaagatgacctcttcaagaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagttta 10615539  T
Q  151 ataagtgcaagtga 164  Q
    | ||||| ||||||    
T  10615540 aaaagtgaaagtga 10615553  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 28532580 - 28532689
Alignment:
Q  70 agaagcttacaattctttaacaagtggaaaagagattgactgtttatggggaagccagaaagattaacctttcggagtttgataagtgcaagtgaaagag 169  Q
    ||||||||||| ||  | |||||||||||||| |||||  |||| ||||| |||  ||||||||||||||| |||||||||  ||||| |||||| ||||    
T  28532580 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagag 28532679  T
Q  170 cttttacccc 179  Q
    | | ||||||    
T  28532680 cctctacccc 28532689  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 17635957 - 17635904
Alignment:
Q  55 atgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 108  Q
    ||||||||||||||||||| ||| |||||||| ||||||| || ||||||||||    
T  17635957 atgatggcttcttcaagaaacttccaattcttgaacaagttgagaagagattga 17635904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 18318964 - 18318891
Alignment:
Q  35 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 108  Q
    ||||||||||||| ||||  |||||||| ||||| |||||||| || ||||| |||||||||| ||| ||||||    
T  18318964 ttatttgatcacagtcaagtatgatggcctcttcgagaagcttccagttcttgaacaagtggataagcgattga 18318891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 18314958 - 18314885
Alignment:
Q  35 ttatttgatcacaatcaaacatgatggcttcttcaagaagcttacaattctttaacaagtggaaaagagattga 108  Q
    ||||||||| ||| | ||| ||||| |  ||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  18314958 ttatttgatgacagtaaaatatgattgtctcttcgagaagcttacagttcttgaacaagtggaaaagcgattga 18314885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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