View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_34 (Length: 250)
Name: NF11543_low_34
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 45082706 - 45082944
Alignment:
| Q |
1 |
caactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacatttgtagatgaatc |
100 |
Q |
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| T |
45082706 |
caactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagaaacaatgtagttgtcttcaatcagaacatttgtagatgaatc |
45082805 |
T |
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| Q |
101 |
tgtataaaagaaagagtggtaaaacaagtagttattattttagtcctttttattgaaccttttattcaatatgaatatgaatgccataagttccatagag |
200 |
Q |
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| T |
45082806 |
tgtatgaaagaaagagtgggaaaacaagtagttattattttagtccttgttattgaaccttttattcaatatgaatatgaatgccataagttccatagag |
45082905 |
T |
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| Q |
201 |
ttggttcatatat--acattacctgggtctatgccatct |
237 |
Q |
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| T |
45082906 |
ttggttcatatatacacattacctgggtctatgccatct |
45082944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 45067620 - 45067711
Alignment:
| Q |
1 |
caactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacatttgta |
92 |
Q |
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| T |
45067620 |
caactttgattccatacccatccaatccacttttaatcgcaatacaatcatcaccagagacaatgtagttgtcttcaattagaacgtttgta |
45067711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 45075184 - 45075258
Alignment:
| Q |
5 |
tttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaat |
79 |
Q |
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| T |
45075184 |
tttgattccatactcatcccatccactttttattgcaatacaatcatcaccagaaactatatagttgtcttcaat |
45075258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 45078410 - 45078488
Alignment:
| Q |
1 |
caactttgattccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaat |
79 |
Q |
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| T |
45078410 |
caactttaattccatactcatcccatccactttttattgcaatgcaatcatcgccagagacaatgaagttgtcttcaat |
45078488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 34504963 - 34505057
Alignment:
| Q |
9 |
attccatactcatcccatccacttttaattgcaatacaatcatcaccagagacaatgtagttgtcttcaatcagaacatttgtagatgaatctgt |
103 |
Q |
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| T |
34504963 |
attccatattgatcccatccactttttatcgcaatacaatcatcaccagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgt |
34505057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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