View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11543_low_35 (Length: 247)

Name: NF11543_low_35
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11543_low_35
NF11543_low_35
[»] chr4 (8 HSPs)
chr4 (16-247)||(21833775-21834006)
chr4 (93-214)||(1755035-1755156)
chr4 (93-198)||(641483-641588)
chr4 (65-206)||(3438082-3438223)
chr4 (93-247)||(55908119-55908273)
chr4 (65-247)||(1600930-1601112)
chr4 (137-195)||(53761306-53761364)
chr4 (93-206)||(547470-547583)
[»] chr3 (3 HSPs)
chr3 (59-247)||(51763837-51764025)
chr3 (22-189)||(13470184-13470351)
chr3 (30-171)||(514192-514333)
[»] chr6 (2 HSPs)
chr6 (29-247)||(6588720-6588941)
chr6 (22-190)||(6416446-6416614)
[»] chr5 (4 HSPs)
chr5 (22-247)||(28532191-28532422)
chr5 (93-214)||(32268029-32268150)
chr5 (16-140)||(41889049-41889173)
chr5 (102-207)||(41900966-41901071)
[»] chr1 (2 HSPs)
chr1 (93-247)||(19467896-19468050)
chr1 (93-190)||(17352198-17352295)
[»] chr7 (3 HSPs)
chr7 (39-247)||(10169527-10169735)
chr7 (39-247)||(10177052-10177260)
chr7 (16-187)||(10615067-10615238)
[»] chr2 (1 HSPs)
chr2 (93-184)||(1037118-1037209)
[»] chr8 (1 HSPs)
chr8 (147-207)||(27922699-27922759)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 21834006 - 21833775
Alignment:
Q  16 atgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834006 atgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattcc 21833907  T
Q  116 atcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaa 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21833906 atcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccaagatatacaaagaa 21833807  T
Q  216 cgcaaactaagacaagtcaaacccttcaaact 247  Q
    ||||||||||||||||||||||||||||||||    
T  21833806 cgcaaactaagacaagtcaaacccttcaaact 21833775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 1755035 - 1755156
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 192  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| || ||| ||||||||| | |||||||||| || | ||||||||||||| || |    
T  1755035 ttggataacaaacatcggattccatcataactatagccggtgcaatgtccaagcacaagcctcttcaaaggaagacttttcattgcaatagagtacagca 1755134  T
Q  193 actcatccgagatatacaaaga 214  Q
     |||||||||||||| ||||||    
T  1755135 gctcatccgagatattcaaaga 1755156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 641483 - 641588
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 192  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |  |||||||| ||||| |||||||| |||| | ||||||||||| |||| |    
T  641483 ttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaatagaggagagaa 641582  T
Q  193 actcat 198  Q
    ||||||    
T  641583 actcat 641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 3438223 - 3438082
Alignment:
Q  65 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaagga 164  Q
    ||||||||||||||| | ||  ||||  |||||||||| | |||||||| || ||||||||||||||||||||||  | |||||||||||  | ||||||    
T  3438223 aagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaagga 3438124  T
Q  165 agaccttcccttgcaatagagtagagtaactcatccgagata 206  Q
    |||||| |  ||||||||||| | ||||| ||||||| ||||    
T  3438123 agacctccaattgcaatagaggaaagtaattcatccgggata 3438082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 55908273 - 55908119
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 192  Q
    |||||||||||| |  | |||||| ||||| ||||||||||||||||| | |||||||| ||  | |||||||||||| || ||||||||||  | || |    
T  55908273 ttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca 55908174  T
Q  193 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 247  Q
    | |||||||||||   ||||||   |||| |||||||||| || || ||||||||    
T  55908173 attcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaact 55908119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 1600930 - 1601112
Alignment:
Q  65 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaagga 164  Q
    |||| |||||||||||| ||  ||||  ||||||||||||| ||  | ||||  |||||||||||| ||| ||| |   ||| |||||||| | ||||||    
T  1600930 aagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcgaggtcaagcctcctcaaagga 1601029  T
Q  165 agaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 247  Q
     ||  |||| ||||||||||| |||| |||| ||||||||||  | || |   |||   ||||||||||||||||||||||||    
T  1601030 ggattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaact 1601112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 53761364 - 53761306
Alignment:
Q  137 atttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaact 195  Q
    |||| |||||||||| || || |||||||||| |||| |||||||||||||||| ||||    
T  53761364 attttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaact 53761306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 547470 - 547583
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 192  Q
    ||||| || |||||| | |||||| ||||||||||||||   |||||| | ||||||||| |  | ||||||| | ||||| ||||||||||| |||| |    
T  547470 ttggacaaaaaacaagatattccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagca 547569  T
Q  193 actcatccgagata 206  Q
    ||  ||||||||||    
T  547570 acatatccgagata 547583  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 247
Target Start/End: Complemental strand, 51764025 - 51763837
Alignment:
Q  59 atcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgtt 158  Q
    ||||| ||||||||||||||  | ||  ||||  ||||||| |||||||| ||||||| ||||||||||||| |||||| || |||||||||||||  |     
T  51764025 atcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttc 51763926  T
Q  159 aaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 247  Q
    ||| ||||||||||||||||||| |||||||| |||||||| ||||| | ||||     ||||  |||| |||||||||||||||||||    
T  51763925 aaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaact 51763837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 13470351 - 13470184
Alignment:
Q  22 acaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcata 121  Q
    |||| |||| |||||||||||||||||||||||    |   |||||||| ||||||||||  || ||||  ||||||||||||| ||| |||||| ||||    
T  13470351 acaattggagaacatgttgatcattcagaaacaa---aagctcaagatctaaatgttggatgccttgacacttggataacaaacgaaatattccagcata 13470255  T
Q  122 actatag---ccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtaga 189  Q
    ||||| |   ||    |||| ||| ||| ||| |||||| |||||||||||||||||||||||| ||||||    
T  13470254 actatgggggccaaaacaatgtcggagggcaaacctcgtcaaaggaagaccttcccttgcaatacagtaga 13470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 514333 - 514192
Alignment:
Q  30 acaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagc 129  Q
    ||||||||||||||||| || || | |  ||||| ||||| ||||||||| |  |  | || ||||||||||||| |||||||||||||||| |  ||||    
T  514333 acaacatgttgatcattgaggaaaagggcatcttgaagattcaaatgttgtatccatttacatttggataacaaagaaaagattccatcatagccgtagc 514234  T
Q  130 cggtgcaatttcgaaggacaagcctcgttaaaggaagacctt 171  Q
    |||| ||| | || || ||||| ||| |||||||||||||||    
T  514233 cggtacaactacggagcacaagtctccttaaaggaagacctt 514192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 6588941 - 6588720
Alignment:
Q  29 gacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacacc---atgacctttggataacaaacaaaagattccatcataacta 125  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||    |||||   ||||||||||| |||||| ||||| ||||  |    
T  6588941 gacaacatgttgatcattcagaaacctattatcttcaagatccaaatgttggaaacttttatgacacatggataacaaataaaagagtccattataataa 6588842  T
Q  126 tagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaa 225  Q
      ||| |  |||| |   || ||||| || || |||||||||| || ||||||||||| |||||| |||||||| ||||||| ||||| |  ||||| ||    
T  6588841 cggccagaacaatatttgagtacaagtcttgtcaaaggaagacgtttccttgcaatagtgtagagcaactcatcggagatattcaaagcagacaaaccaa 6588742  T
Q  226 gacaagtcaaacccttcaaact 247  Q
    |||||||||||| |||||||||    
T  6588741 gacaagtcaaactcttcaaact 6588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 6416446 - 6416614
Alignment:
Q  22 acaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcata 121  Q
    |||| |||||||||||||||||||| ||||||     |  |||||||| |||||||||||  || ||||  ||||||||||||| ||| |||||| || |    
T  6416446 acaattggacaacatgttgatcattaagaaacga---aagttcaagattcaaatgttggatgccttgacacttggataacaaacgaaatattccagcaga 6416542  T
Q  122 actatag---ccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag 190  Q
    ||||| |   ||    |||| ||| |||  || |||||| |||||||||||||||||||||||| |||||||    
T  6416543 actatgggggccaaaacaatgtcggagggtaaacctcgtcaaaggaagaccttcccttgcaatacagtagag 6416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 28532191 - 28532422
Alignment:
Q  22 acaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacct------ttggataacaaacaaaagattcc 115  Q
    ||||||||| |||||||||||||||||||||| |  ||  | ||| || ||||||| ||| ||| |||| |      ||||||||||||||||||| |||    
T  28532191 acaactggataacatgttgatcattcagaaacttactaagtccaatatacaaatgtcggaaaccttgacgtcgacacttggataacaaacaaaagagtcc 28532290  T
Q  116 atcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaa 215  Q
     ||||||||||||||   || ||||   ||||||||| |  | |||||||||||| |||||||||||| |||||| |||||||| || ||||  ||| ||    
T  28532291 gtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtagagcaactcatcagaaatattaaaataa 28532390  T
Q  216 cgcaaactaagacaagtcaaacccttcaaact 247  Q
      ||||| |||||||||||||||||| |||||    
T  28532391 tacaaaccaagacaagtcaaacccttgaaact 28532422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 32268029 - 32268150
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 192  Q
    |||||||  ||| ||| |||||||  ||| |||||||||||||||| | | || ||||||||||| |||||||||| ||    |||||||||| |||| |    
T  32268029 ttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggagaacaagcctcgtcaaaggaagacattggtatgcaatagaggagagca 32268128  T
Q  193 actcatccgagatatacaaaga 214  Q
    ||||||| ||||||| ||||||    
T  32268129 actcatctgagatattcaaaga 32268150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 41889173 - 41889049
Alignment:
Q  16 atgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattcc 115  Q
    ||||| ||||||  |||||||||| || ||||||||| |   ||| || |||||||||| |||||| |   | ||  |||||||  ||||||||||||||    
T  41889173 atgaagacaactccacaacatgtttatgattcagaaaaacaatattttgaagatccaaaagttggatatgttcacacttggatagtaaacaaaagattcc 41889074  T
Q  116 atcataactatagccggtgcaattt 140  Q
    | |||||||| ||||||||||||||    
T  41889073 agcataactaaagccggtgcaattt 41889049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 41901071 - 41900966
Alignment:
Q  102 aaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccg 201  Q
    |||||||  ||||||  ||||||||| |||||||||||| | || |||||||| || ||||| |||||||   |||||||||||  ||| ||| |||| |    
T  41901071 aaacaaataattccagaataactataaccggtgcaattttggagaacaagcctagtcaaaggtagaccttggattgcaatagagatgagaaacacatctg 41900972  T
Q  202 agatat 207  Q
    ||||||    
T  41900971 agatat 41900966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 19468050 - 19467896
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 192  Q
    |||||||||||||||||||||||| |||| |||| |||   ||||| |   |||||||||||||| ||||| || ||||||| ||||||||||||||| |    
T  19468050 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 19467951  T
Q  193 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaact 247  Q
      ||||| ||||||| || | | | | || ||||| |||||||||||||||||||    
T  19467950 tttcatcagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaact 19467896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 17352198 - 17352295
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag 190  Q
    |||||||||||| ||||  ||||| ||||||| ||||| ||| ||| | |||||||||| ||| | ||||||| ||| ||| ||||||||||| ||||    
T  17352198 ttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaaaggaaaaccctcctttgcaatagaggagag 17352295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 10169735 - 10169527
Alignment:
Q  39 tgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaat 138  Q
    ||||||||||| || |||  || |||||||||||  ||||| | |||  |||  || ||| ||||||||||||||||| |||| || ||| |   |||||    
T  10169735 tgatcattcaggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaat 10169636  T
Q  139 ttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacc 238  Q
     ||  ||| |||||||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||||| || ||| | ||||  |||| ||||||||||    
T  10169635 atctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacc 10169536  T
Q  239 cttcaaact 247  Q
    |||||||||    
T  10169535 cttcaaact 10169527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 10177260 - 10177052
Alignment:
Q  39 tgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaat 138  Q
    ||||||||||| || |||  || |||||||||||  ||||| | |||  |||  || ||| ||||||||||||||||| |||| || ||| |   |||||    
T  10177260 tgatcattcaggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaat 10177161  T
Q  139 ttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacc 238  Q
     ||  ||| |||||||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||||| || ||| | ||||  |||| ||||||||||    
T  10177160 atctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacc 10177061  T
Q  239 cttcaaact 247  Q
    |||||||||    
T  10177060 cttcaaact 10177052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 10615067 - 10615238
Alignment:
Q  16 atgaatacaactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattcc 115  Q
    ||||| |||| |||||||||||||||||||||||||||     |  ||||||||||||||||||||  || ||||  |||||||| |||||| |||||||    
T  10615067 atgaagacaattggacaacatgttgatcattcagaaacgg---aagttcaagatccaaatgttggaagccttgacacttggataataaacaatagattcc 10615163  T
Q  116 atcataacta---tagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagta 187  Q
    | ||||||||   | ||||   |||| ||| |||  || |||||| |||||||||||  ||||||||||||||||    
T  10615164 agcataactatggtggccgaaacaatgtcggagggtaaacctcgtcaaaggaagacccacccttgcaatagagta 10615238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 1037209 - 1037118
Alignment:
Q  93 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaataga 184  Q
    |||||||||||| |  | |||||| ||||| |||||| |||||||||| | |||||||| ||  | |||||||||||| || ||||||||||    
T  1037209 ttggataacaaagagtatattccaacataattatagctggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaataga 1037118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 27922699 - 27922759
Alignment:
Q  147 acaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatat 207  Q
    ||||||||||| ||||| |||| |||  | ||||||||| |||| ||||||||||||||||    
T  27922699 acaagcctcgtcaaaggtagacgttcggtggcaatagaggagagcaactcatccgagatat 27922759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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