View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11543_low_37 (Length: 240)
Name: NF11543_low_37
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38249255 - 38249032
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249255 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
38249156 |
T |
|
| Q |
101 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38249155 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaatgacattatcaaagaaaa |
38249056 |
T |
|
| Q |
201 |
tatgtcacacacacagaagatggt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38249055 |
tatgtcacacacacagaagatggt |
38249032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38227640 - 38227419
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| | ||||||||||| || |
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|
| T |
38227640 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaataaacattattatgatattgattttccaagagggcatatagcactaaa |
38227541 |
T |
|
| Q |
101 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38227540 |
gagtttcaatgctgaagtagttgatgatgctggtaatcctatacctctccatgaaacctatctccatcattggcttgttcaaagacattatcaaagaaaa |
38227441 |
T |
|
| Q |
201 |
tatgtcacacacacagaagatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38227440 |
tatgtcacacacacagaagatg |
38227419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38215220 - 38215003
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
100 |
Q |
| |
|
||||||| ||| ||||||| || || || || ||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||| |||||||||| |
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|
| T |
38215220 |
cagctgtatttttgtccccgaaattcgagctaggacctggatcagttatcaatagatattattatgatattgattttccaagaggtcatgtagcactcaa |
38215121 |
T |
|
| Q |
101 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||| || ||||||||||| |
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|
| T |
38215120 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacttatcttcatcattgggctgttggaagatatcatcaaagaaaa |
38215021 |
T |
|
| Q |
201 |
tatgtcacacacacagaa |
218 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
38215020 |
catgttacacacacagaa |
38215003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 38221259 - 38221045
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
100 |
Q |
| |
|
||||||| ||| ||||||| || || || || |||||||||||||||||||||| || ||||||| |||||||||||||||| | |||| ||||| |||| |
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|
| T |
38221259 |
cagctgtatttttgtccccgaaattcgagctaggacctggatcagttatcaataaatattattatgatattgattttccaagaggtcatgtagcaatcaa |
38221160 |
T |
|
| Q |
101 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaa |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| || ||||||| ||| |
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|
| T |
38221159 |
gagtttccatgctgaagtagttgatgaagatggtaatcctatacccctccatgaaacttatcttcatcattgggttgttgaaagatatcatcaaagtaaa |
38221060 |
T |
|
| Q |
201 |
tatgtcacacacaca |
215 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38221059 |
catgtcacacacaca |
38221045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38254370 - 38254153
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
100 |
Q |
| |
|
||||||||||| ||||||| || ||||| || ||||||||||||||| ||||||||| ||||||| |||||||||||||||| | ||||||||| |||| |
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|
| T |
38254370 |
cagctgtttttttgtccccgaaatttgagctaggacctggatcagttgtcaatagatattattatgatattgattttccaagaggccatatagcaatcaa |
38254271 |
T |
|
| Q |
101 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaa |
200 |
Q |
| |
|
| |||| |||||||||| ||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||| |||||| |||| || ||||||||||| |
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|
| T |
38254270 |
ggatttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaa |
38254171 |
T |
|
| Q |
201 |
tatgtcacacacacagaa |
218 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
38254170 |
catgttacacacacagaa |
38254153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 38244075 - 38243893
Alignment:
| Q |
33 |
ggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaagagtttcaatgctgaagttgttgatgaagatg |
132 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
38244075 |
ggacctggatcagttatcaataaagaatattatgatattgattttccaagaggtcatattgcactcaagagtttcaatgctgaagtagttgatgaagttg |
38243976 |
T |
|
| Q |
133 |
gtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaatatgtcacacacaca |
215 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| ||||| |||| || ||||||| ||| |||||||||||||| |
|
|
| T |
38243975 |
gtaatcctatacctctccatgaaacttatctccatcattggggtgttggaagatatcatcaaagtaaacatgtcacacacaca |
38243893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38239139 - 38238944
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaa |
100 |
Q |
| |
|
||||||| ||| ||||||| || ||||| || ||||||||||||||| ||||| ||| ||||||| |||||| ||||||||| | |||| |||||||||| |
|
|
| T |
38239139 |
cagctgtatttttgtccccgaaatttgagctaggacctggatcagttgtcaatggatattattatgatattggttttccaagaggtcatgtagcactcaa |
38239040 |
T |
|
| Q |
101 |
gagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaag |
196 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || |||||| |||| ||||||||||| |||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
38239039 |
gagtttcaatgctgaagtagttgacgaatcagggaatcctgtacctctccatgaaacttatctccatcattggcttgttgtaagatatcatcaaag |
38238944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 17455858 - 17455653
Alignment:
| Q |
13 |
tgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaagagtttcaatgc |
112 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||| |||| ||||||| || ||||||||||||||| | |||| ||||| |||||||||| |||| |
|
|
| T |
17455858 |
tgtccccaaaatttgagctaagacctggatcagttataaataaattttatgatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgc |
17455759 |
T |
|
| Q |
113 |
tgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaagacattatcaaagaaaatatgtcacacac |
212 |
Q |
| |
|
||||||||||||||||| ||| ||| | ||||| | || ||||| ||||||||||||||| |||||| |||| || ||||||| || ||| ||||||| |
|
|
| T |
17455758 |
tgaagttgttgatgaagctgggaattcgataccgttgcacgaaacttatctccatcattgggttgttggaagatatcatcaaagtaatcatgccacacac |
17455659 |
T |
|
| Q |
213 |
acagaa |
218 |
Q |
| |
|
|||||| |
|
|
| T |
17455658 |
acagaa |
17455653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 17434735 - 17434583
Alignment:
| Q |
33 |
ggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaagagtttcaatgctgaagttgttgatgaagatg |
132 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| ||||||||||||||| | |||| ||||| |||||||||| |||| |||||||||||||||| || |
|
|
| T |
17434735 |
ggaccaggatcagttataaataaattttattatgatattgattttccaaaaggtcatgtagcaatcaagagttttgatgcagaagttgttgatgaagctg |
17434636 |
T |
|
| Q |
133 |
gtaatcctatacccctccatgaaacctatctccatcattggcttgttgaaaga |
185 |
Q |
| |
|
| ||| | ||||| | || ||||| ||||| ||||||||| |||||| |||| |
|
|
| T |
17434635 |
ggaattcgataccgttgcacgaaacttatcttcatcattgggttgttgcaaga |
17434583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18559625 - 18559535
Alignment:
| Q |
1 |
cagctgtttttctgtcccctaagtttgaacttggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatat |
91 |
Q |
| |
|
||||||| ||| |||||||||| ||||| | ||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||||| |
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|
| T |
18559625 |
cagctgtatttttgtcccctaaatttgagttaggacctggatcagttatcaatagatattattatgatattgattttccaagaggtcatat |
18559535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 15912959 - 15913099
Alignment:
| Q |
33 |
ggacctggatcagttatcaatagattttattattatattgattttccaagtgatcatatagcactcaagagtttcaatgctgaagttgttgatgaagatg |
132 |
Q |
| |
|
||||||||||||||||| || |||| ||| ||| |||||||||||||||| | ||| |||||||||||||||||||| | || || | |||||||| || |
|
|
| T |
15912959 |
ggacctggatcagttataaaaagatattaatataatattgattttccaagaggtcacatagcactcaagagtttcaacgacgaggtagctgatgaagttg |
15913058 |
T |
|
| Q |
133 |
gtaatcctatacccctccatgaaacctatctccatcattgg |
173 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
15913059 |
gtaatcctatacctctccatgaaacctatttccatcattgg |
15913099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 11484993 - 11485108
Alignment:
| Q |
70 |
ttgattttccaagtgatcatatagcactcaagagtttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatca |
169 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||| ||||||||| ||| ||||| || ||| | |||| |||||| |||| ||||| ||||| |
|
|
| T |
11484993 |
ttgattttccaagaggtcatatttcactcaagagtttctttgctgaagtagttaatgaatcagggaattcagtacctctccatcaaacttatctacatca |
11485092 |
T |
|
| Q |
170 |
ttggcttgttgaaaga |
185 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
11485093 |
ttggattgttgtaaga |
11485108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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