View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_39 (Length: 237)
Name: NF11543_low_39
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36718638 - 36718860
Alignment:
| Q |
1 |
aagtaaatgtactcaaataaattgactcgaaatcttcaaccttcataaccgcttcaatgacagtcatgtgtttaatttgtgctatgttaaaggatttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36718638 |
aagtaaatgtactcaaataaattgactcgaaatcttcaaccttcataatcgcttcaatgacagtcatgtgtttaatttgtgctatgttagaggatttcat |
36718737 |
T |
|
| Q |
101 |
gatggttctgaaaaccaaaaagtaacttgttgagttttgcaactctaaaagacttcacaaatcatacatgagcaaaggtatgcagaattagaatatgaag |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
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| T |
36718738 |
gatggttctaaaaaccaaaaagtaacttgttgagttttgcaactctaaaagacttcacaaatcatacatgaacaaagttctgcagaattagaatatgaag |
36718837 |
T |
|
| Q |
201 |
acaaggtttggcagggtgaaaga |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36718838 |
acaaggtttggcagggtgaaaga |
36718860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 35413989 - 35413826
Alignment:
| Q |
1 |
aagtaaatgtactcaaataaattgactcgaaatcttcaaccttcataaccgcttcaatgacagtcatgtgtttaatttgtgctatgttaaaggatttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
35413989 |
aagtaaatgtactcaaataaattgactcgaaatcttcaaccttcataaccgcttcaatgacattcatgtgtttaatttgtgctatgttaagggatttcat |
35413890 |
T |
|
| Q |
101 |
gatggttctgaaaaccaaaaagtaacttgttgagttttgcaactctaaaagacttcacaaatca |
164 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35413889 |
gatgaatctaaaaaccaaaaagtaacttgttgagttttgcaactctaaaagacttcacagatca |
35413826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 35413825 - 35413788
Alignment:
| Q |
186 |
aattagaatatgaagacaaggtttggcagggtgaaaga |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
35413825 |
aattagaatatgaagagaaggtttggcagggtgaaaga |
35413788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 26303377 - 26303421
Alignment:
| Q |
111 |
aaaaccaaaaagtaacttgttgagttttgcaactctaaaagactt |
155 |
Q |
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| T |
26303377 |
aaaaccaaaaagtaacttgttaagttttgcaactctaagagactt |
26303421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 17636987 - 17636950
Alignment:
| Q |
186 |
aattagaatatgaagacaaggtttggcagggtgaaaga |
223 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
17636987 |
aattagaatatgaagacaaggtttggcagagtgaaaga |
17636950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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