View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11543_low_5 (Length: 655)

Name: NF11543_low_5
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11543_low_5
NF11543_low_5
[»] chr4 (27 HSPs)
chr4 (19-339)||(3767665-3767986)
chr4 (406-585)||(3768052-3768232)
chr4 (80-318)||(34513686-34513924)
chr4 (48-339)||(45499086-45499379)
chr4 (116-336)||(37910578-37910797)
chr4 (55-336)||(28115840-28116121)
chr4 (57-336)||(34940259-34940538)
chr4 (141-327)||(5787224-5787410)
chr4 (172-327)||(44290091-44290246)
chr4 (178-336)||(34513934-34514091)
chr4 (96-326)||(17702135-17702365)
chr4 (56-143)||(21342155-21342242)
chr4 (602-644)||(3768259-3768301)
chr4 (240-306)||(11138750-11138816)
chr4 (55-127)||(37911176-37911248)
chr4 (68-144)||(53923655-53923731)
chr4 (108-151)||(11138663-11138706)
chr4 (234-285)||(53923864-53923915)
chr4 (405-439)||(5787115-5787149)
chr4 (408-441)||(34940610-34940643)
chr4 (97-153)||(3692642-3692698)
chr4 (405-441)||(36198626-36198662)
chr4 (405-441)||(37910474-37910510)
chr4 (405-441)||(44289437-44289473)
chr4 (440-476)||(45498901-45498937)
chr4 (405-441)||(45498984-45499020)
chr4 (115-151)||(53923745-53923781)
[»] chr1 (16 HSPs)
chr1 (55-336)||(28622827-28623108)
chr1 (48-310)||(49549473-49549734)
chr1 (49-288)||(37346974-37347213)
chr1 (55-323)||(19909968-19910236)
chr1 (56-283)||(10306758-10306987)
chr1 (82-151)||(48527377-48527446)
chr1 (96-157)||(52267631-52267692)
chr1 (405-441)||(37346168-37346204)
chr1 (405-440)||(52268254-52268289)
chr1 (405-441)||(19910328-19910364)
chr1 (275-311)||(49549853-49549889)
chr1 (406-437)||(30952148-30952179)
chr1 (230-299)||(12856822-12856892)
chr1 (69-194)||(35508891-35509016)
chr1 (120-176)||(12856940-12856996)
chr1 (405-441)||(17702972-17703008)
[»] chr5 (21 HSPs)
chr5 (55-339)||(29860834-29861117)
chr5 (56-334)||(33007914-33008189)
chr5 (92-336)||(33134090-33134333)
chr5 (56-333)||(15922102-15922379)
chr5 (50-337)||(31077809-31078092)
chr5 (56-283)||(7883742-7883969)
chr5 (94-336)||(25346967-25347219)
chr5 (49-283)||(5868239-5868472)
chr5 (49-189)||(42683974-42684114)
chr5 (93-260)||(21092372-21092537)
chr5 (68-194)||(2498915-2499041)
chr5 (272-336)||(21091178-21091242)
chr5 (405-441)||(25346862-25346898)
chr5 (405-441)||(33134402-33134438)
chr5 (405-440)||(21091074-21091109)
chr5 (405-441)||(31078184-31078220)
chr5 (405-441)||(39351585-39351621)
chr5 (272-336)||(42683848-42683912)
chr5 (405-442)||(33007806-33007843)
chr5 (409-441)||(7883601-7883633)
chr5 (405-441)||(29861183-29861219)
[»] chr2 (16 HSPs)
chr2 (49-334)||(40619612-40619897)
chr2 (87-336)||(41595239-41595488)
chr2 (48-332)||(13996071-13996355)
chr2 (68-336)||(27338700-27338958)
chr2 (49-322)||(13349429-13349702)
chr2 (172-337)||(19695769-19695932)
chr2 (49-236)||(37485562-37485746)
chr2 (49-163)||(19695466-19695580)
chr2 (273-336)||(37485757-37485820)
chr2 (406-441)||(13995549-13995584)
chr2 (171-266)||(34355880-34355975)
chr2 (405-441)||(27339027-27339063)
chr2 (231-306)||(15665342-15665417)
chr2 (405-443)||(40619503-40619541)
chr2 (405-441)||(13349341-13349377)
chr2 (405-441)||(37485889-37485925)
[»] chr8 (24 HSPs)
chr8 (56-336)||(43596799-43597079)
chr8 (55-338)||(37246131-37246412)
chr8 (56-339)||(16295305-16295586)
chr8 (56-339)||(16303007-16303288)
chr8 (49-254)||(32962016-32962221)
chr8 (55-336)||(15268592-15268873)
chr8 (105-333)||(27696248-27696473)
chr8 (123-336)||(40953263-40953476)
chr8 (143-327)||(11656270-11656454)
chr8 (49-283)||(16456456-16456690)
chr8 (87-151)||(11657003-11657067)
chr8 (92-221)||(8491048-8491176)
chr8 (48-111)||(42180461-42180524)
chr8 (88-133)||(511650-511695)
chr8 (405-441)||(3174233-3174269)
chr8 (405-441)||(40953545-40953581)
chr8 (406-437)||(23586059-23586090)
chr8 (219-266)||(35010687-35010734)
chr8 (405-441)||(11656158-11656194)
chr8 (405-441)||(16295652-16295688)
chr8 (405-441)||(16303354-16303390)
chr8 (405-441)||(27696546-27696582)
chr8 (405-441)||(42180626-42180662)
chr8 (405-441)||(43597148-43597184)
[»] chr3 (16 HSPs)
chr3 (47-336)||(28457698-28457982)
chr3 (48-336)||(40700941-40701228)
chr3 (74-283)||(21748362-21748571)
chr3 (49-255)||(33072584-33072790)
chr3 (55-203)||(7818464-7818611)
chr3 (55-281)||(45853075-45853299)
chr3 (56-182)||(21495053-21495178)
chr3 (249-327)||(4384957-4385035)
chr3 (237-283)||(21495222-21495268)
chr3 (48-144)||(46663163-46663259)
chr3 (99-139)||(27488469-27488509)
chr3 (405-441)||(40700836-40700872)
chr3 (54-157)||(41865803-41865906)
chr3 (405-438)||(28457596-28457629)
chr3 (405-441)||(54819668-54819705)
chr3 (239-279)||(33072808-33072848)
[»] chr6 (15 HSPs)
chr6 (52-339)||(23404450-23404736)
chr6 (87-333)||(9314806-9315051)
chr6 (48-317)||(12255070-12255339)
chr6 (56-336)||(10789337-10789618)
chr6 (49-336)||(29979314-29979597)
chr6 (55-339)||(32329317-32329590)
chr6 (106-306)||(24660738-24660938)
chr6 (230-283)||(391236-391289)
chr6 (57-154)||(12267316-12267413)
chr6 (405-441)||(9315123-9315159)
chr6 (290-336)||(391200-391246)
chr6 (405-441)||(12255428-12255464)
chr6 (405-441)||(391095-391131)
chr6 (405-441)||(10789233-10789269)
chr6 (405-441)||(32329655-32329691)
[»] chr7 (16 HSPs)
chr7 (55-336)||(18502991-18503274)
chr7 (56-337)||(15672876-15673149)
chr7 (87-339)||(34703033-34703288)
chr7 (108-209)||(6110160-6110261)
chr7 (247-336)||(34866358-34866447)
chr7 (70-268)||(3480709-3480908)
chr7 (53-174)||(32585825-32585946)
chr7 (55-157)||(25102600-25102707)
chr7 (80-306)||(28428933-28429160)
chr7 (49-151)||(24429348-24429450)
chr7 (239-283)||(6110261-6110305)
chr7 (234-300)||(17508667-17508733)
chr7 (234-300)||(17544481-17544547)
chr7 (75-164)||(15524263-15524351)
chr7 (230-287)||(31804759-31804816)
chr7 (405-441)||(34866253-34866289)
[»] scaffold0702 (1 HSPs)
scaffold0702 (96-288)||(3936-4127)
[»] scaffold0662 (1 HSPs)
scaffold0662 (96-288)||(3975-4166)
[»] scaffold0817 (1 HSPs)
scaffold0817 (55-116)||(1-62)
[»] scaffold0957 (2 HSPs)
scaffold0957 (92-168)||(1659-1735)
scaffold0957 (247-302)||(1816-1871)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 3767665 - 3767986
Alignment:
Q  19 aaaagcacccggtgtacca-caaagacctcaagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttca 117  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3767665 aaaagcacccggtgtaccaacaaagacctcaagggtccgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatttca 3767764  T
Q  118 tgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767765 tgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaa 3767864  T
Q  218 ttatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3767865 ttatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgtatttt 3767964  T
Q  318 ctattataatcaataacatacc 339  Q
    ||||||||||||||||||||||    
T  3767965 ctattataatcaataacatacc 3767986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 406 - 585
Target Start/End: Original strand, 3768052 - 3768232
Alignment:
Q  406 ttatcatgtgcgcatcaaacacatgataggattaatatcatgcccctat-cctatcatgaccatcaaacggatcctaatcttaaaaagaagtgacttttg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3768052 ttatcatgtgcgcatcaaacacatgataggattaatatcatgccccttttcctatcatgaccatcaaacggatcctaatcttaaaaagaagtgacttttg 3768151  T
Q  505 gacatcaaaattttgatcttacctgtgtattttggtttttatgttaatttttttaactagtgtgtagaagataaaatgttt 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3768152 gacatcaaaattttgatcttacctgtgtattttggtttttatgttaatttttataactagtgtgtagaagataaaatgttt 3768232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 80 - 318
Target Start/End: Complemental strand, 34513924 - 34513686
Alignment:
Q  80 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcc 179  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||| |||||| |||  |||||||||    
T  34513924 atgatatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccatttttctatcatatcctgactttcc 34513825  T
Q  180 tttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaa 279  Q
    ||||| |||| |||| | ||||||||||| |||| ||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||  ||||||||    
T  34513824 tttgtaatttctatcctgagtataagctgggttagaaattatcctgatgggattagaaaatcatttcttatttattatcttgatattctgccatttttaa 34513725  T
Q  280 aatattgtcgtttttaaaataatgatagcatgcattttc 318  Q
    ||||||||| ||||||||||||||||| |||| ||||||    
T  34513724 aatattgtcatttttaaaataatgataacatgtattttc 34513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 48 - 339
Target Start/End: Complemental strand, 45499379 - 45499086
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 147  Q
    |||||| ||| ||||| || ||||||||||  | |||| |||| ||||||||||| || |||||||  |||||||||||||||||| |||||||||||||    
T  45499379 aagggtccgtgtgatgatcaggatagggaggcaagatatgatatattaatcatattcttcttaaatcacatgtttgatgcaccaaaatgataggataaaa 45499280  T
Q  148 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 247  Q
    |||| |||||||||||| |||  |||||||||||||| ||||||||| | | |||| |||| |||| ||| ||||  |||| |||||||| ||||||| |    
T  45499279 taaaccatttctctatcctatcctgactttcctttgtaatttatatcctgaatataggctgggttagaaactatcatgatgggattagaagatcattctt 45499180  T
Q  248 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagc--atgcattttctattataatcaataacatacc 339  Q
    ||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||  ||| ||||||||||||||| |||||||||||    
T  45499179 tatttattatcttgatattctgccattttgaaaatattgtcatttttaaaataatgatagcatatgtattttctattataattaataacatacc 45499086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 116 - 336
Target Start/End: Complemental strand, 37910797 - 37910578
Alignment:
Q  116 catgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttata 215  Q
    ||||||||||||||||||| |||| |||||||||||||||||  ||||| |||  |||||||| ||||| ||||||||||| ||||||||||| |||| |    
T  37910797 catgtttgatgcaccaaagggatacgataaaataaatcattttcctatcatatcctgactttcgtttgtaatttatatcatgagtataagctgggttaga 37910698  T
Q  216 aattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatt 315  Q
    |||||||| |||| |||||||| ||||||||||||||||||| |||||||||||  | ||||||||||||||| |||||||||||||||||||||| |||    
T  37910697 aattatcctgatgggattagaagatcattccttatttattattttgatattctgcca-ttttaaaatattgtcatttttaaaataatgatagcatgtatt 37910599  T
Q  316 ttctattataatcaataacat 336  Q
    |||||||||||| ||||||||    
T  37910598 ttctattataattaataacat 37910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 55 - 336
Target Start/End: Complemental strand, 28116121 - 28115840
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    ||||| |||||  ||||||||||  |||||| ||||||||||||||||  ||||||||| |||| ||||||||||| |||||||| ||||||||||| ||    
T  28116121 cgtttaatggtgaggatagggagccatgatatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaacca 28116022  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||  ||||| |||  | |||||||||||| |||| |||| | |||||||| || |||| ||||||||| ||||  ||||||| ||||||| ||||||||    
T  28116021 ttttcctatcctatcctaactttcctttgtaatttctatcctgagtataagttgtgttagaaattatcctgatggaattagaagatcattctttatttat 28115922  T
Q  255 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||| ||| ||  ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  28115921 tatcttgagattttgccatttttaaaatattgtcattttttaaattatgatagcatgcattttctattataattaataacat 28115840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 57 - 336
Target Start/End: Original strand, 34940259 - 34940538
Alignment:
Q  57 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatt 156  Q
    |||||||||| ||||||||||| |  |||  ||||||||||||| | ||  |||||| |||||||||||||||||||  |||||||||||||||| ||||    
T  34940259 tttgatggtcaggatagggagacagaatataatacattaatcatgttctctttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccatt 34940358  T
Q  157 tctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatta 256  Q
    |   |||| |||  |||||||||||||| |||| |||| | |||||| ||||| ||||||||||||| |||| |||||||| |||| | |||||||||||    
T  34940359 ttcatatcctatcctgactttcctttgtaatttctatcctgagtatatgctgatttataaattatcctgatgggattagaaaatcaattcttatttatta 34940458  T
Q  257 tcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||||||||    |||| |||||||| || ||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  34940459 tcttgatattcttcctttttaaaaatattatcatttttaaaataatgataacatgtattttctgttataattaataacat 34940538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 141 - 327
Target Start/End: Complemental strand, 5787410 - 5787224
Alignment:
Q  141 gataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatat 240  Q
    |||||||||||||||||  ||||| |||  ||| |||||||||| |||| |||    |||||| ||||||||| ||||||||| |||| ||||| || ||    
T  5787410 gataaaataaatcattttcctatcctatcatgattttcctttgtaatttctatgtcgagtatatgctgagttagaaattatcctgatgggattaaaagat 5787311  T
Q  241 cattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 327  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5787310 cattccttatttattatcttgatattctgccatttttaaaatattgtcatttttaaaataatgatagcatgtattttctattataat 5787224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 172 - 327
Target Start/End: Complemental strand, 44290246 - 44290091
Alignment:
Q  172 gactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgtt 271  Q
    ||||||||||||| ||||||||| | |||||| ||||||||| || ||||||  |||||||||||| ||||||  |||||||||||||||||||||||      
T  44290246 gactttcctttgtaatttatatcctgagtataggctgagttagaagttatcctaatgagattagaagatcattaattatttattatcttgatattctgcc 44290147  T
Q  272 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 327  Q
    |||||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  44290146 atttttaaaatattatcatttttaaaataatgatagcatgtattttctattataat 44290091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 178 - 336
Target Start/End: Original strand, 34513934 - 34514091
Alignment:
Q  178 cctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttattttt 277  Q
    ||||||| |||| |||| | |||||||| ||||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||||  ||||||    
T  34513934 cctttgtaatttctatcttgagtataagatgagttagaaattatccggacgagattagaagatcatttcttatttattatcttgatattctgccattttt 34514033  T
Q  278 aaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  34514034 aaaatattgtc-attttaaaataatgatagcatgtattttccattataattaataacat 34514091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 96 - 326
Target Start/End: Original strand, 17702135 - 17702365
Alignment:
Q  96 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa-tcatttctctatcttattttgactttcctttgtcatttatatc 194  Q
    |||||||| | ||||||| |||||||||||||||||||| |||| ||||||||||| |  ||||| |||| ||| ||| ||||||||||| |||| ||||    
T  17702135 atcatatctttcttaaatctcatgtttgatgcaccaaagagataagataaaataaactgttttct-tatcctatcttgtctttcctttgtaatttttatc 17702233  T
Q  195 ataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgttttt 294  Q
     | |||||||  ||||||| ||| ||||| |||   ||||||| || ||| ||||||||||||| |||||||||   ||||||||||| ||||| |||||    
T  17702234 ctgagtataaattgagttagaaactatcctgatagaattagaagataatttcttatttattatcatgatattcttccatttttaaaatgttgtcattttt 17702333  T
Q  295 aaaataatgatagcatgcattttctattataa 326  Q
    |||||||||||| |||| ||||  ||||||||    
T  17702334 aaaataatgatatcatgtatttgttattataa 17702365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 21342242 - 21342155
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggat 143  Q
    ||||||||| |  ||||| |||| | |||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||    
T  21342242 gtttgatggccaagatagagagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcacaaaatggataggat 21342155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 644
Target Start/End: Original strand, 3768259 - 3768301
Alignment:
Q  602 gcacatacaatgtcgtataatctctgtattttgatgtccatct 644  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  3768259 gcacatacaatgtcgtataatctctgtattttgatgttcatct 3768301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 11138750 - 11138816
Alignment:
Q  240 tcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgata 306  Q
    ||||| ||| ||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||    
T  11138750 tcatttcttgtttattatcatgatattctttcatttttaaaatgttgtcatttttaaaataatgata 11138816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 37911248 - 37911176
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgc 127  Q
    |||||||||||| |||||||||||   |||| |||||||||| |||||||| || |||| |||||||||||||    
T  37911248 cgtttgatggtcaggatagggagacgggatatgatacattaaccatatcctactgaaatctcatgtttgatgc 37911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 53923655 - 53923731
Alignment:
Q  68 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata 144  Q
    ||||| |||||||  ||| |||| ||||||||||| |  ||||| | |||||||||||||||||||| |||||||||    
T  53923655 ggataaggagataaaatatgatatattaatcatattcgacttaattatcatgtttgatgcaccaaagagataggata 53923731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 11138663 - 11138706
Alignment:
Q  108 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 151  Q
    |||||| ||||||||||| || ||||||||||||||||||||||    
T  11138663 ttaaatatcatgtttgatacatcaaagtgataggataaaataaa 11138706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 53923864 - 53923915
Alignment:
Q  234 agaatatcattccttatttattatcttgatattctgttatttttaaaatatt 285  Q
    |||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  53923864 agaagatcattccttaattattatcatgatattctgtcatttttataatatt 53923915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 5787149 - 5787115
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggatta 439  Q
    |||||||||||||||||||||||||||||| ||||    
T  5787149 gttatcatgtgcgcatcaaacacatgatagtatta 5787115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 34940610 - 34940643
Alignment:
Q  408 atcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||||||| |||||||    
T  34940610 atcatgtgcgcatcaaacacatgatatgattaat 34940643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 3692698 - 3692642
Alignment:
Q  97 tcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 153  Q
    ||||||| | ||||||| |||||||||||||| ||||| |||| |||| ||||||||    
T  3692698 tcatatcatacttaaatctcatgtttgatgcatcaaagagataagatacaataaatc 3692642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 36198662 - 36198626
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| |||||||||||||||| |||||||    
T  36198662 gttatcatgtgcacatcaaacacatgataagattaat 36198626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 37910510 - 37910474
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  37910510 gttatcatgtgtgcatcaaacacatgatatgattaat 37910474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 44289473 - 44289437
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||| | |||||||    
T  44289473 gttatcatgtgcgcatcaaacacatgagaagattaat 44289437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 476
Target Start/End: Complemental strand, 45498937 - 45498901
Alignment:
Q  440 atatcatgcccctatcctatcatgaccatcaaacgga 476  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  45498937 atatcctgcctctatcctatcatgaccatcaaacgga 45498901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 45499020 - 45498984
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  45499020 gttatcatgtgtgcatcaaacacatgatatgattaat 45498984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 53923745 - 53923781
Alignment:
Q  115 tcatgtttgatgcaccaaagtgataggataaaataaa 151  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  53923745 tcatgttcgatgcaccaaagagataggataaaataaa 53923781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 55 - 336
Target Start/End: Complemental strand, 28623108 - 28622827
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| ||||||||||  |    
T  28623108 cgtttgatggtcaggatagggagacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaacta 28623009  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    ||| |||||| |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  28623008 tttttctatcctatcctgactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgatgagattagaagatcattccttatttat 28622909  T
Q  255 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  28622908 tatcttgatattctgcgatttttaaaatattgtcattttttaaataatgatagcatgtattttctattataattaataacat 28622827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 48 - 310
Target Start/End: Original strand, 49549473 - 49549734
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 147  Q
    |||||| |||||||||||| |||||| |||  | |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  49549473 aagggtccgtttgatggtcaggatagtgaggcaagatatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaa 49549572  T
Q  148 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 247  Q
    ||||||||||| ||||| |||  |||||||||||||| |||||||| || ||||||   || |||| || ||||||  ||| |||| ||| |||||||||    
T  49549573 taaatcatttccctatcatatcctgactttcctttgtaatttatat-atgagtatagattgggttaaaagttatcctaatgggatttgaagatcattcct 49549671  T
Q  248 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcat 310  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  49549672 tatttattatcttgatattctgccatttttaaaatattgtcatttttaaaataatgatagcat 49549734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 37347213 - 37346974
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||||||    
T  37347213 agggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaat 37347114  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 248  Q
    ||| ||||| |||||| |||  ||| |||||||||| |||| |||| | |||||| | || |||| ||||||||  |||| |||||||| ||||||||||    
T  37347113 aaaccatttttctatcctatcctgattttcctttgtaatttctatcctgagtatacgatgggttagaaattatcatgatgggattagaagatcattcctt 37347014  T
Q  249 atttattatcttgatattctgttatttttaaaatattgtc 288  Q
    |||||||||| ||||||||||  ||||| |||||||||||    
T  37347013 atttattatcctgatattctgccattttaaaaatattgtc 37346974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 55 - 323
Target Start/End: Original strand, 19909968 - 19910236
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||||  |||||| |||| |  ||| ||||||||||| ||||  ||||||||| |||||||||||||| ||||| |||| ||||||||||| ||    
T  19909968 cgtttgatggttaggatagagagaca--atatgatacattaattatattgtgcttaaatatcatgtttgatgcatcaaagagataagataaaataaacca 19910065  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatcc--agatgagattagaatatcattccttattt 252  Q
    ||| |||||| |||  |||||||||||| | |||  |||| | |||||    || |||| |||||||||  | | |||||||||| ||||| |||||||     
T  19910066 tttttctatcgtatactgactttcctttataattgttatcctgagtatttaatgggttagaaattatcctaataagagattagaagatcatgccttatta 19910165  T
Q  253 attatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatta 323  Q
    |||||||||||||| ||  ||||||||||||||    ||||||||||||| |||||||| |||||||||||    
T  19910166 attatcttgatattttgcaatttttaaaatatttatatttttaaaataataatagcatgtattttctatta 19910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 10306987 - 10306758
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    ||||||||||| | ||||| | ||||||||  ||| |||||||||||  | | ||||| |||||||||||||| ||||  || || |||||||||| |||    
T  10306987 gtttgatggtcagtataggaaaatatgatataatatattaatcatattattcataaatctcatgtttgatgcatcaaatagagagaataaaataaaccat 10306888  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagat--tagaatatcattccttattta 253  Q
    ||  ||||  |||  ||| ||||||| || |||| |||| | |||||||||||  ||| ||| ||||  |||  |||  || || |||||| ||||||||    
T  10306887 tttcctattatatcatgattttccttcgtaatttttatcttgagtataagctgcattagaaactatcatgataggattataaaagatcatttcttattta 10306788  T
Q  254 ttatcttgatattctgttatttttaaaata 283  Q
    ||||| ||||||| ||| ||||||||||||    
T  10306787 ttatcatgatattttgtcatttttaaaata 10306758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 48527377 - 48527446
Alignment:
Q  82 gatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 151  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||| ||||  |||| |||||||||||    
T  48527377 gatatgatatatttatcatatcttgcttaaatttcatgtttgatgcatcaaaaagatatgataaaataaa 48527446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 52267631 - 52267692
Alignment:
Q  96 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcattt 157  Q
    ||||||| || ||||||||||||||| |||| ||||||| |||| |||||||||||||||||    
T  52267631 atcatattctacttaaatttcatgttcgatgtaccaaagagatatgataaaataaatcattt 52267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 37346204 - 37346168
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  37346204 gttatcatgtgcgcatcaaacacatgataggattaat 37346168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 52268254 - 52268289
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaa 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  52268254 gttatcatgtgcgcatcaaacacatgataggattaa 52268289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 19910328 - 19910364
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19910328 gttatcatgggcgcatcaaacacatgataggattaat 19910364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 49549889 - 49549853
Alignment:
Q  275 tttaaaatattgtcgtttttaaaataatgatagcatg 311  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49549889 tttaaaatattgtcatttttaaaataatgatagcatg 49549853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 30952148 - 30952179
Alignment:
Q  406 ttatcatgtgcgcatcaaacacatgataggat 437  Q
    ||||||||||||||||||||||||||||||||    
T  30952148 ttatcatgtgcgcatcaaacacatgataggat 30952179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 12856892 - 12856822
Alignment:
Q  230 gattagaatatcattccttatttattatcttgatattctgttatttttaa-aatattgtcgtttttaaaat 299  Q
    |||||||| ||||||| |||||||||||| ||||||| || ||||||||| |   ||||||||||||||||    
T  12856892 gattagaaaatcattctttatttattatcatgatattatgctatttttaagacgtttgtcgtttttaaaat 12856822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 35509016 - 35508891
Alignment:
Q  69 gatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttat 168  Q
    |||||||||| |  ||| |||| ||| |||||||  | ||||||| ||||||||||| ||| |||  |||||||||||||||| |||||   |||| |||    
T  35509016 gatagggagacagtatatgatatatttatcatattatacttaaatctcatgtttgatccactaaatagataggataaaataaaccattttcttatcctat 35508917  T
Q  169 tttgactttcctttgtcatttatatc 194  Q
    |  ||||| ||||||| |||| ||||    
T  35508916 tacgacttgcctttgtaatttttatc 35508891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 12856996 - 12856940
Alignment:
Q  120 tttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactt 176  Q
    |||||||||| ||||  ||| ||||||||||||||||| || ||||||| |||||||    
T  12856996 tttgatgcactaaagatatatgataaaataaatcatttttcaatcttatcttgactt 12856940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 17702972 - 17703008
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  17702972 gttatcatgtgtgcatcaaaaacatgataggattaat 17703008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 55 - 339
Target Start/End: Original strand, 29860834 - 29861117
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||| | | ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  29860834 cgtttgatggccagtatagggagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaacca 29860933  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||| ||||| |||  |||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||| |||| |||||||| ||||||||||||||||    
T  29860934 tttccctatcatatcatgactttcctttgtaatttatatcctgagtataggctaagttagaaattatcctgatgggattagaagatcattccttatttat 29861033  T
Q  255 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 339  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  29861034 tatcttgatattctgccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 29861117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 56 - 334
Target Start/End: Complemental strand, 33008189 - 33007914
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    ||||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||| ||| |||||||  ||||||| ||||||||||||||||||||    
T  33008189 gtttgatggtcaggatagggagacaggatatgatacattaattatatcctgcttaaatatcacgtttgatagaccaaagggataggataaaataaatcat 33008090  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 255  Q
    || |||||| |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||| |||||||| |||||||||||||||||    
T  33008089 tt-tctatcatatcctgactttcctttgtaatttttatcctgagtataagctgggttagaaattatcctgatgggattagaagatcattccttatttatt 33007991  T
Q  256 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataac 334  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||  | |||||||||||| ||||||    
T  33007990 atcttgatattctgtcattattaaaatattgtcatttttaaaataatgataggatg--tattctattataattaataac 33007914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 92 - 336
Target Start/End: Original strand, 33134090 - 33134333
Alignment:
Q  92 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttat 191  Q
    |||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||  ||||| |||  |||||||||||||| |||| |    
T  33134090 attaatcatatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattttcctatcctatcctgactttcctttgtaatttct 33134189  T
Q  192 atcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtt 291  Q
    ||||| |||||| |||  |||| |||||||||  |||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  33134190 atcatgagtataggctaggttagaaattatcct-atggaattagaagatcattccttatttattatcttgatattctgtcatttttaaaatattgtcatt 33134288  T
Q  292 tttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  33134289 tttaaaataatgatagcatgtattttctattataattaataacat 33134333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 56 - 333
Target Start/End: Complemental strand, 15922379 - 15922102
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    ||||||||||| |||||| || | | |||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| ||    
T  15922379 gtttgatggtcaggatagagatacaggatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaattat 15922280  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 255  Q
    || |||||| |||  |||||||||||||| |||| |||  | |||||  | || |||| ||||||||| |||| |||||||| |||| |||||||| |||    
T  15922279 ttttctatcatatcatgactttcctttgtaatttctattttgagtatcggttgggttagaaattatcctgatgggattagaagatcaatccttattaatt 15922180  T
Q  256 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataa 333  Q
    ||||||||||||||   ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  15922179 atcttgatattctgcctttttttaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataa 15922102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 50 - 337
Target Start/End: Original strand, 31077809 - 31078092
Alignment:
Q  50 gggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaata 149  Q
    |||| ||||| |||||| ||||||  ||||| |||| |||||||||||||||| || ||||||| | |||||||||||||||||| | ||||||||||||    
T  31077809 gggtccgtttaatggtcaggatagacagataggatatgatacattaatcatattctacttaaatctaatgtttgatgcaccaaagggttaggataaaata 31077908  T
Q  150 aatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctta 249  Q
    ||  ||||   |||  |||  |||||||||||||| ||||||||| | |||||||||||||||| ||||||||| |||| |||||||| |||||||||||    
T  31077909 aactattttcttattctatcatgactttcctttgtaatttatatcctgagtataagctgagttagaaattatcctgatg-gattagaagatcattcctta 31078007  T
Q  250 tttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 337  Q
    |||||||   ||||||| | | ||| |||||||||| || | |||||||||| ||||||||| ||||||||||||||| |||||||||    
T  31078008 tttatta---tgatattttatcattcttaaaatattttcatatttaaaataacgatagcatgtattttctattataattaataacata 31078092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 7883969 - 7883742
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||| |||    
T  7883969 gtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaaccat 7883870  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 255  Q
    ||  ||||| |||| ||| |||||||||| |||| |||  | |||||| ||||  ||| ||||||||| |||| |||||||| |||||||||||||||||    
T  7883869 tttcctatcctattctgaatttcctttgtaatttctattctgagtataggctggattagaaattatcctgatgggattagaagatcattccttatttatt 7883770  T
Q  256 atcttgatattctgttatttttaaaata 283  Q
    ||||| ||||||||  ||||||||||||    
T  7883769 atctttatattctgccatttttaaaata 7883742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 94 - 336
Target Start/End: Complemental strand, 25347219 - 25346967
Alignment:
Q  94 taatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatat 193  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||  ||||| |||  ||| |||||||||| |||| |||    
T  25347219 taatcatatcctccttaaatctcatgtttgatgcaccaaagggataggataaaataaaccattttcctatcatatcctgattttcctttgtaatttctat 25347120  T
Q  194 cataagtataagct----------gagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaata 283  Q
    ||| ||||||||||          | |||| ||||||||| || | |||||||| ||||||  ||||||| |||||||||||| ||  ||||||||||||    
T  25347119 cattagtataagctagtataagatgggttagaaattatcctgacgggattagaacatcattttttatttactatcttgatattatgccatttttaaaata 25347020  T
Q  284 ttgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||    
T  25347019 ttgtcatttttaaaataatgatagcatgtattttccattgtaattaataacat 25346967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 49 - 283
Target Start/End: Complemental strand, 5868472 - 5868239
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||||||| ||||||||||| | |||| |||| |||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  5868472 agggtccgtttgatggtcaggatagggagacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaat 5868373  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 248  Q
    ||| |||||  ||||| |||   ||||||||||||| |||| |||| | |||||  |||| |||| ||| ||||| |||| | |||||| ||||||| ||    
T  5868372 aaaccattttcctatcctatcccgactttcctttgtaatttctatcttgagtattggctgggttagaaactatcctgatg-ggttagaagatcattcgtt 5868274  T
Q  249 atttattatcttgatattctgttatttttaaaata 283  Q
    |||||||||| ||||||||||  ||||||||||||    
T  5868273 atttattatcgtgatattctgccatttttaaaata 5868239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 42684114 - 42683974
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| |||| ||||||||    
T  42684114 agggttcgtttgatggttaggatagggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaat 42684015  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcattt 189  Q
    ||||||||| |||||| |||  |||||||||||||| ||||    
T  42684014 aaatcatttttctatcatatcctgactttcctttgtaattt 42683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 93 - 260
Target Start/End: Complemental strand, 21092537 - 21092372
Alignment:
Q  93 ttaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttata 192  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||   ||||||  |||| ||||  | |||||||| ||| |||| ||    
T  21092537 ttaatcatatcctgtttaaatttcatgtttgatgcaccaaatggataggataaaatc--tcattttcctatattatcctcactttcctatgtaatttcta 21092440  T
Q  193 tcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatctt 260  Q
    || | | ||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  21092439 tcctgaatataaactgagttataaattatcctgatgagattagaatatcatttcttattcattatctt 21092372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 2498915 - 2499041
Alignment:
Q  68 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatctta 167  Q
    |||||| ||||  ||||| |||| ||||||||||| || ||||||| |||||||||||||||| ||| |||| | ||||||||||||||| |||||||||    
T  2498915 ggatagagagacgtgatatgatatattaatcatattctacttaaatatcatgtttgatgcacccaagagatatggtaaaataaatcatttttctatctta 2499014  T
Q  168 ttttgactttcctttgtcatttatatc 194  Q
    | |||||| | |||||| |||| ||||    
T  2499015 tcttgactattctttgtaatttttatc 2499041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 21091242 - 21091178
Alignment:
Q  272 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21091242 atttttgaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataacat 21091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 25346898 - 25346862
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  25346898 gttatcatgtgcgcatcaaacacatgataggattaat 25346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 33134402 - 33134438
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  33134402 gttatcatgtgcgcatcaaacacatgataggattaat 33134438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 21091109 - 21091074
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaa 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  21091109 gttatcatgtgcgcatcaaacacatgataggattaa 21091074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 31078184 - 31078220
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31078184 gttatcatgtgcgcatcaaacacatgatagaattaat 31078220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 39351585 - 39351621
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39351585 gttatcatgtgcgcatcaaacacatgatatgattaat 39351621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 42683912 - 42683848
Alignment:
Q  272 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||||||||||||  ||| |||||||| ||| |||  ||||||||||||||| ||||||||    
T  42683912 atttttaaaatattgtcaatttcaaaataataataacatatattttctattataattaataacat 42683848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 33007843 - 33007806
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaata 442  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  33007843 gttatcatgtgtgcatcaaacacatgatatgattaata 33007806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 7883633 - 7883601
Alignment:
Q  409 tcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||| |||||||    
T  7883633 tcatgtgcgcatcaaacacatgatatgattaat 7883601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 29861183 - 29861219
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| |||||||||||||||| |||||||    
T  29861183 gttatcatgtgcacatcaaacacatgataagattaat 29861219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 1e-83; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 49 - 334
Target Start/End: Complemental strand, 40619897 - 40619612
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  40619897 agggtgcgtttgatggtcaggatagagagataggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaat 40619798  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 248  Q
    ||| ||||| |||||| |||  ||||||||||| || |||| |||| | |||||| | || |||| ||||||| |  ||| |||||||| ||||||||||    
T  40619797 aaaccatttttctatcatatcctgactttccttcgtaatttctatcctgagtataggttgggttagaaattatacttatgggattagaagatcattcctt 40619698  T
Q  249 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataac 334  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  40619697 atttattaccttgatattctgttatttttaaaatattgtcatttttaaaataatgatagcatgtattttttattataattaataac 40619612  T

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Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 87 - 336
Target Start/End: Original strand, 41595239 - 41595488
Alignment:
Q  87 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 186  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||| ||| | |||||| |||| ||||||||| |||| |    
T  41595239 gatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaaccatatttctatcatattctgactttccattgtaa 41595338  T
Q  187 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattg 286  Q
    ||| |||| | |||||||| ||||||| ||||||||| |||| |||||||| ||||||  |||||||||||||||||||||| | |||||||||||||||    
T  41595339 tttctatcctgagtataagttgagttagaaattatcctgatgggattagaagatcattttttatttattatcttgatattctttcatttttaaaatattg 41595438  T
Q  287 tcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    || |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  41595439 tcatttttaaaataatgatagcatgtattttctattataattaataacat 41595488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 48 - 332
Target Start/End: Complemental strand, 13996355 - 13996071
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 147  Q
    |||||| |||||||||||| ||||||| |||   |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||| || | |||||||    
T  13996355 aagggtgcgtttgatggtcaggataggaagacgggatatgatacattaattatatcctccttaaatctcatgtttgatgcaccaaagggacatgataaaa 13996256  T
Q  148 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 247  Q
    |||||||| | |||||| |||  |||||||||||||| |||| |||| | |||||||| || |||| ||||||||| |||| |||||||| |||||||||    
T  13996255 taaatcatgtttctatcatatcctgactttcctttgtaatttctatcctgagtataagttgggttagaaattatcctgatgggattagaagatcattcct 13996156  T
Q  248 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaata 332  Q
    |||||||||| ||||||||||   ||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||    
T  13996155 tatttattattttgatattcttccattttaaaaatattgtcatttttaaaataatgatagcatgtatttcctattataattaata 13996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 68 - 336
Target Start/End: Original strand, 27338700 - 27338958
Alignment:
Q  68 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatctta 167  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| ||||||||||| ||||| |||||| ||    
T  27338700 ggatagggagataggatatgatacattaatcatatcctacttaaatctcatgtttgatgcactaaaatgatatgataaaataaaccatttttctatccta 27338799  T
Q  168 ttttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattc 267  Q
    |  |||||||||||||| |||| ||            ||||||||| |||| |||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  27338800 tcctgactttcctttgtaatttttag-----------gctgagttagaaatgatcctgatgggattataatatcattccttatttattatcttgatattc 27338888  T
Q  268 tgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt-ataatcaataacat 336  Q
    ||| |||||||||||||| || |||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  27338889 tgtcatttttaaaatattatcatttttaaaataatgatagcatgtattttctattaataattaataacat 27338958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 13349702 - 13349429
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||| ||| ||||||| ||| | |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  |||||||||||||    
T  13349702 agggtccgtttgatagtcaggataggaagacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaat 13349603  T
Q  149 aaatcat-ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 247  Q
    |||  || |||| |||| | |  | |||||||||||| |||| |||| |||||||| | ||||||| ||||||||| |||| |||||||| |||||||||    
T  13349602 aaacaatattct-tatcctctcctaactttcctttgtaatttctatcctaagtatatgatgagttagaaattatcctgatgcgattagaagatcattcct 13349504  T
Q  248 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt 322  Q
    ||||||||||||||||||||||  |||||| ||||||| || |||||||||||||||||| ||| ||||||||||    
T  13349503 tatttattatcttgatattctgccattttttaaatattatcatttttaaaataatgatagaatgtattttctatt 13349429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 172 - 337
Target Start/End: Original strand, 19695769 - 19695932
Alignment:
Q  172 gactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgtt 271  Q
    |||||| |||||| |||| |||| | |||||||||||||||| ||||||||| ||||  ||||||| ||||| |||||||||||||||||||||||  |     
T  19695769 gacttttctttgtaatttctatcttgagtataagctgagttagaaattatcctgatggaattagaagatcatcccttatttattatcttgatattc--tc 19695866  T
Q  272 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 337  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| |||||||||    
T  19695867 atttttaaaatattgtcacttttaaaataatgatagcatatattttctattataattaataacata 19695932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 37485562 - 37485746
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    |||||||||||||||||  |||||| |||| | ||||  ||| |||||||||||||||||||||| |||||||||||||||||||  |||| ||||||||    
T  37485562 agggttcgtttgatggta-ggatagagagacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaat 37485660  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattaga 236  Q
    ||| |||||  ||||| |||  |||||||||||||| |||| ||||||  | ||| ||||||||| ||||||||| |||| |||||||    
T  37485661 aaaccattttcctatcatatcctgactttcctttgtaatttctatcat--gaatatgctgagttagaaattatcctgatgggattaga 37485746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 19695466 - 19695580
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| ||||||||| || |||||| |||| | |||| ||||||||||||||||||| | ||||| |||||||||||||||||||  |||||| || |||    
T  19695466 agggtgcgtttgatgatcaggatagagagacaggatatgatacattaatcatatcctacgtaaatctcatgtttgatgcaccaaatggataggctagaat 19695565  T
Q  149 aaatcatttctctat 163  Q
    ||| ||||| |||||    
T  19695566 aaaccatttttctat 19695580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 37485757 - 37485820
Alignment:
Q  273 tttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||| ||||||| || ||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  37485757 ttttttaaatattttcatttttaaaataatgataacatgtattttctattataattaataacat 37485820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 441
Target Start/End: Complemental strand, 13995584 - 13995549
Alignment:
Q  406 ttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||||||||||||    
T  13995584 ttatcatgtgcgcatcaaacacatgataggattaat 13995549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 34355880 - 34355975
Alignment:
Q  171 tgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatatt 266  Q
    |||||| ||||||| |||| ||||   |||||||| ||  |||||||||| ||||||  ||||||||  ||||||||||||||||||| |||||||    
T  34355880 tgacttgcctttgtaatttttatcccgagtataagttggattataaattacccagataggattagaaattcattccttatttattatcatgatatt 34355975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 27339027 - 27339063
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27339027 gttatcatgtgcgcatcaaacacatgatatgattaat 27339063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 15665417 - 15665342
Alignment:
Q  231 attagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgata 306  Q
    ||||||| || |||| |||||||||||| |||| || ||| ||||||||||| ||| | |||||||||||| ||||    
T  15665417 attagaagataattctttatttattatcatgattttttgtcatttttaaaatgttgacatttttaaaataacgata 15665342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 443
Target Start/End: Complemental strand, 40619541 - 40619503
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaatat 443  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  40619541 gttatcatgtgcacatcaaacacatgataagattaatat 40619503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 13349377 - 13349341
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  13349377 gttatcatatgcgcatcaaacacacgataggattaat 13349341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 37485889 - 37485925
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| |||||||||||||||| |||||||    
T  37485889 gttatcatgtgcacatcaaacacatgatatgattaat 37485925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 56 - 336
Target Start/End: Original strand, 43596799 - 43597079
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    ||||||||| | ||||||||||  | |||| ||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  43596799 gtttgatggccaggatagggagtcaggatatgatacattaatcatatccgacttaaatatcatgtttgatgcacgaaagagataggataaaataaatcat 43596898  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 255  Q
    || |||||| |||   ||||||||||||| ||||||||| | ||||||   ||||||| ||||||||| ||||||||||||| |||| |||||||||||     
T  43596899 ttttctatcatatcccgactttcctttgtaatttatatcctgagtatagattgagttaaaaattatcctgatgagattagaagatcactccttatttata 43596998  T
Q  256 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||| ||||||||  ||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||| ||||||||    
T  43596999 atctttatattctgccatttttaaaatattgtcattttaaaaataatcatagcatgtattttctattataattaataacat 43597079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 55 - 338
Target Start/End: Original strand, 37246131 - 37246412
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||||   |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||  ||    
T  37246131 cgtttgatggtaaagatagggagacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataaccca 37246230  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||| ||| | |||| |||||||||||||| ||||||||| | |||||| |||  |||| ||||||||| || | |||||||| ||||||||||||||||    
T  37246231 tttcccta-catattctgactttcctttgtaatttatatcttgagtataggctaggttagaaattatcctgaggggattagaagatcattccttatttat 37246329  T
Q  255 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatac 338  Q
    |||||||||||||||  |||||| |||||||||  ||||||||||| | ||| |||| ||||||||||||||| ||||||||||    
T  37246330 tatcttgatattctgccattttt-aaatattgttatttttaaaatagttataacatgtattttctattataattaataacatac 37246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 56 - 339
Target Start/End: Original strand, 16295305 - 16295586
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||  ||    
T  16295305 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaat 16295404  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 255  Q
    ||| ||||| |||  |||||||||||||| ||||||||| | ||||||  ||  |||| ||||||| | |||| |||| ||| |||||||||||||||||    
T  16295405 ttccctatcatatcctgactttcctttgtaatttatatcctgagtatagactaggttagaaattat-ctgatgggattggaagatcattccttatttatt 16295503  T
Q  256 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 339  Q
    |||||||||||||   |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  16295504 atcttgatattctaccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 16295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 56 - 339
Target Start/End: Original strand, 16303007 - 16303288
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||  ||    
T  16303007 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaat 16303106  T
Q  156 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 255  Q
    ||| ||||| |||  |||||||||||||| ||||||||| | ||||||  ||  |||| ||||||| | |||| |||| ||| |||||||||||||||||    
T  16303107 ttccctatcatatcctgactttcctttgtaatttatatcctgagtatagactaggttagaaattat-ctgatgggattggaagatcattccttatttatt 16303205  T
Q  256 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 339  Q
    |||||||||||||   |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  16303206 atcttgatattctaccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 16303288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 32962016 - 32962221
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||    
T  32962016 agggtgcgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaat 32962115  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 248  Q
    |||  ||||  ||||| |||  |||||||||||||| |||| |||| | |||| ||||||||||||||||||||| ||||||||||||| |||||||||     
T  32962116 aaactattttcctatcatatcctgactttcctttgtaatttctatcctgagtacaagctgagttataaattatcctgatgagattagaagatcattcctc 32962215  T
Q  249 atttat 254  Q
    ||||||    
T  32962216 atttat 32962221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 55 - 336
Target Start/End: Original strand, 15268592 - 15268873
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||||| ||||| ||||| | |||| |||||||||||||||||||||| |||| ||||||||||| || ||||  |||||||||||||||| ||    
T  15268592 cgtttgatggtcaggataaggagacaggatatgatacattaatcatatcctgctgaaatctcatgtttgatacaacaaatggataggataaaataaacca 15268691  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||  ||||| |||   ||||||||||||| |||| |||  |||||||| |||| |||| |||||||||  ||| ||||| || ||| ||||||||||||    
T  15268692 ttttcctatcctatcccgactttcctttgtaatttttattctaagtatatgctgggttagaaattatcctaatg-gattaaaagatcgttccttatttat 15268790  T
Q  255 tatcttgatattctgttatttttaaaatattgtc-gtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||||||||||   |||| ||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  15268791 tatcttgatattctaccatttataaaatactgtcagtgtttaaaataatgatagcatgtattttctattataattaatcacat 15268873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 105 - 333
Target Start/End: Original strand, 27696248 - 27696473
Alignment:
Q  105 tgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataa 204  Q
    ||||||||| |||||||||||||||||||  |||| |||||||||||  ||||  ||||||||| |||| |   |||||| ||||||||| |  ||||||    
T  27696248 tgcttaaatctcatgtttgatgcaccaaatggatatgataaaataaactattttcctatcttatcttgatt---ctttgtaatttatatcctgtgtataa 27696344  T
Q  205 gctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatga 304  Q
    |||  |||| ||||||||  |||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  27696345 gctaggttagaaattatcttgatgggattaggagatcattccttatttattatcttgatattctgtcatttttaaaatattgttatttttaaaataatga 27696444  T
Q  305 tagcatgcattttctattataatcaataa 333  Q
    ||||||| ||||||||||||||| |||||    
T  27696445 tagcatgtattttctattataattaataa 27696473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 123 - 336
Target Start/End: Original strand, 40953263 - 40953476
Alignment:
Q  123 gatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatc 222  Q
    |||||||||||| |||| ||| ||||||||||||| |||||| |||  |||||||||||||| |||| |||| | |||||| |||| |||| |||||||     
T  40953263 gatgcaccaaagagatatgatgaaataaatcatttttctatcatatcctgactttcctttgtaatttttatcctgagtataggctgggttagaaattatt 40953362  T
Q  223 cagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt 322  Q
       ||| |||||||| |||||||||||||||||| ||||||||||||   |||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  40953363 ataatgggattagaagatcattccttatttattaccttgatattctgccctttttaaaatattgtcatttttaaaataatgatagcatgtattttttatt 40953462  T
Q  323 ataatcaataacat 336  Q
    ||||| ||||||||    
T  40953463 ataattaataacat 40953476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 143 - 327
Target Start/End: Complemental strand, 11656454 - 11656270
Alignment:
Q  143 taaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatca 242  Q
    ||||||||| ||||| |||||| |||  |||||||||||||| |||| |||| | | |||| | || |||| |||||||||  |||||||||||| ||||    
T  11656454 taaaataaaccatttttctatcctatcctgactttcctttgtaatttctatcctgaatataggttgggttagaaattatcctaatgagattagaagatca 11656355  T
Q  243 ttccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 327  Q
    ||||||||||||| |||| |||||||   ||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  11656354 ttccttatttattgtcttaatattctaccattttgaaaatattgtcatttttaaaataatgatagcatgtaatttctattataat 11656270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 16456456 - 16456690
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    |||||||||||||||||| ||||| |||||    ||| |||| || |||||||| || ||||||| |||||||||||||||||||| |||| ||||||||    
T  16456456 agggttcgtttgatggtcaggataaggagacgaaatatgatatatcaatcatattctacttaaatatcatgtttgatgcaccaaagagataagataaaat 16456555  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagatt-agaatatcattcct 247  Q
    |||  |||| | |||| |||  ||| || | ||||| |||  |||| | ||||||||||  |||| ||||||||  |||  |||| | ||||| ||| ||    
T  16456556 aaactatttttttatcctatcctgatttgcttttgtaattcttatcttgagtataagctacgttagaaattatcttgataggattaaaaatat-atttct 16456654  T
Q  248 tatttattatcttgatattctgttatttttaaaata 283  Q
    ||||||| ||| ||| ||||||| ||||||||||||    
T  16456655 tatttatgatcatgacattctgtcatttttaaaata 16456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 11657067 - 11657003
Alignment:
Q  87 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 151  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  11657067 gatacattaatcatatcctgcttaaatctcatgtttgatgtaccaaagggatatgataaaataaa 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 8491176 - 8491048
Alignment:
Q  92 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttat 191  Q
    |||||||||||| || |||||| |||| ||||||| | ||||| |||| ||||||||||||||||| ||||||||| | | |||| | ||||| |||| |    
T  8491176 attaatcatatcttgtttaaatatcatatttgatgtatcaaagagatatgataaaataaatcattt-tctatcttactctcacttgcatttgtaattttt 8491078  T
Q  192 atcataagtataagctgagttataaattat 221  Q
    ||| | || ||||| ||||||| |||||||    
T  8491077 atcttgagaataagttgagttagaaattat 8491048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 42180461 - 42180524
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaa 111  Q
    |||||| |||||||||||| ||||||||||| |  ||| |||||||||||||||||| ||||||    
T  42180461 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatccagcttaa 42180524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 511650 - 511695
Alignment:
Q  88 atacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 133  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||    
T  511650 atacatttattatatcctgcttgaatttcatgtttgatgcaccaaa 511695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 3174233 - 3174269
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3174233 gttatcatgtacgcatcaaacacatgataggattaat 3174269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 40953545 - 40953581
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40953545 gttatcatgtgcgcatcaaacacatgatatgattaat 40953581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 23586059 - 23586090
Alignment:
Q  406 ttatcatgtgcgcatcaaacacatgataggat 437  Q
    ||||||||||||||||||||||||||||||||    
T  23586059 ttatcatgtgcgcatcaaacacatgataggat 23586090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 35010734 - 35010687
Alignment:
Q  219 tatccagatgagattagaatatcattccttatttattatcttgatatt 266  Q
    ||||| |||||||||| || ||||||||||||||||||||||| ||||    
T  35010734 tatcccgatgagattaaaagatcattccttatttattatcttgctatt 35010687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 11656194 - 11656158
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||| |||||||||||||||||| |||||||    
T  11656194 gttatcatgtacgcatcaaacacatgatatgattaat 11656158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 16295652 - 16295688
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| |||||||||||||||| |||||||    
T  16295652 gttatcatgtgcacatcaaacacatgataagattaat 16295688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 16303354 - 16303390
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| |||||||||||||||| |||||||    
T  16303354 gttatcatgtgcacatcaaacacatgataagattaat 16303390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 27696546 - 27696582
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  27696546 gttatcatgtgcacattaaacacatgataggattaat 27696582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 42180626 - 42180662
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||  ||||||||||||||    
T  42180626 gttatcatgtgcgcatcaaacgtatgataggattaat 42180662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 43597148 - 43597184
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  43597148 gttatcatgtgcccatcaaacatatgataggattaat 43597184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 8e-72; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 28457982 - 28457698
Alignment:
Q  47 caagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaa 146  Q
    ||||||| |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  28457982 caagggtccgtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaa 28457883  T
Q  147 ataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcc 246  Q
    ||||| ||||| ||||||||||    |||||||||||| |||| |||| | ||      ||| |||| || |||||| |||| |||||||| ||||||||    
T  28457882 ataaaccatttttctatcttatcccaactttcctttgtaatttctatcctgag-----actgggttagaagttatcctgatgggattagaagatcattcc 28457788  T
Q  247 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||||||||||||||  ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  28457787 ttatttattatcttgatatattgccatttttaaaatattgtcatttttaaaataatgatagcatgcattttctattataattactaacat 28457698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 40701228 - 40700941
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 147  Q
    |||||| |||||||||||| ||||||  ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |||||   ||| |||||||    
T  40701228 aagggtccgtttgatggtcaggatagaaagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgctccaaaagtatatgataaaa 40701129  T
Q  148 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 247  Q
    |||| ||||| ||| || |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||  ||||| || |||||||||    
T  40701128 taaaccatttttctgtcatatcctgactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgataggattataagatcattcct 40701029  T
Q  248 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||| ||||||||||| ||  ||||| |||||||||||  ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  40701028 tatttatcatcttgatattatgacattttaaaaatattgtc-attttaaattaatgatagcatgtattttctattataattaataacat 40700941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 74 - 283
Target Start/End: Complemental strand, 21748571 - 21748362
Alignment:
Q  74 ggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttga 173  Q
    ||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| || |||||  ||||| |||| |||    
T  21748571 ggagacatgatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaattaaccattttcctatcctattatga 21748472  T
Q  174 ctttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttat 273  Q
     |||||||||| |||| |||| |||||||| |||| |||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||  ||    
T  21748471 ttttcctttgtaatttctatcctaagtataggctgggttaaaaattatcctgatgagattagaagaccattccttatttattatcttgatattctgccat 21748372  T
Q  274 ttttaaaata 283  Q
    ||||||||||    
T  21748371 ttttaaaata 21748362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 255
Target Start/End: Original strand, 33072584 - 33072790
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||| ||| ||||||||||| |  ||| |||||||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  33072584 agggtgcgtttgatagtcaggatagggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaat 33072683  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 248  Q
    ||| |||||  ||||| |||  | | |||||||||| |||| |||| | |||||| |||  |||| ||||||||  |||  ||||| || ||||||||||    
T  33072684 aaaccattttcctatcatatcctaagtttcctttgtaatttctatcctgagtataggctaggttagaaattatcatgataggattataagatcattcctt 33072783  T
Q  249 atttatt 255  Q
    |||||||    
T  33072784 atttatt 33072790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 7818611 - 7818464
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||| |||| ||||| |||||||||| ||    
T  7818611 cgtttgatggtcaagatagggatatatgatatgatacattaatcatattctgcttaaatctcatgtttgatacactaaagagatagaataaaataaa-ca 7818513  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtata 203  Q
    |||  ||||| |||| | |||||||||||| |||| |||| ||| ||||    
T  7818512 ttttactatcctattctaactttcctttgtaatttctatcctaaatata 7818464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 45853299 - 45853075
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||||| |||  |||||| |  ||| ||||||||||| ||||||| ||||||| || | |||| ||||||||||  |||  |||||||||| ||    
T  45853299 cgtttgatggtcagga--gggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaacca 45853202  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||   | || |||| ||||||||| |||| |||| |||| | |||||| |||| |||||||  ||||  |||  ||||| |||||||||||||||||||    
T  45853201 ttttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataatctatcttgattggattaaaatatcattccttatttat 45853102  T
Q  255 tatcttgatattctgttatttttaaaa 281  Q
    |||| ||||||||||| ||||||||||    
T  45853101 tatcgtgatattctgtcatttttaaaa 45853075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 21495053 - 21495178
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 155  Q
    |||||||| ||  |||||||||| |||||| |||| |||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||  ||    
T  21495053 gtttgatgatcacgatagggagacatgatatgatatattaatcatatcttg-ttaaatctcatgtttgatgcaccaaattgataggataaaataaacgat 21495151  T
Q  156 ttctctatcttattttgactttccttt 182  Q
    || |||||| ||| ||| |||||||||    
T  21495152 ttttctatcatatcttggctttccttt 21495178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 4385035 - 4384957
Alignment:
Q  249 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 327  Q
    |||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| |||| ||||  |||||||||    
T  4385035 atttattatcatgatattatgttatttttaaaatgttgtcatttttaaaataatgatatcatgtatttgatattataat 4384957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 21495222 - 21495268
Alignment:
Q  237 atatcattccttatttattatcttgatattctgttatttttaaaata 283  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21495222 atatcattccttatttattatcatgatattctgtcatttttaaaata 21495268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 46663163 - 46663259
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata 144  Q
    ||||| ||||| ||||||| ||||| ||||| |  ||| |||||||| |||||||| || |||||| |||| ||||||||||||||  |||||||||    
T  46663163 aaggggtcgttagatggtcgggataaggagacaatatatgatacatttatcatatcatgtttaaatctcatatttgatgcaccaaacagataggata 46663259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 27488469 - 27488509
Alignment:
Q  99 atatcctgcttaaatttcatgtttgatgcaccaaagtgata 139  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  27488469 atatcctggttaaatttcatgtttgatgcaccaaagagata 27488509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 40700872 - 40700836
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40700872 gttatcatgtgtgcatcaaacacatgataggattaat 40700836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 41865906 - 41865803
Alignment:
Q  54 tcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 153  Q
    |||||||||||   ||||||||||||| |||| |||| | | ||||||||| |||||||| |||| |||||| ||  |||| ||||  ||| ||||||||    
T  41865906 tcgtttgatggcaaggatagggagataagatatgataaaattatcatatcccgcttaaatctcatatttgattcataaaagggatataatataataaatc 41865807  T
Q  154 attt 157  Q
    ||||    
T  41865806 attt 41865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 28457629 - 28457596
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggatt 438  Q
    |||||||||||||||||||||| |||||||||||    
T  28457629 gttatcatgtgcgcatcaaacatatgataggatt 28457596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 54819705 - 54819668
Alignment:
Q  405 gttatcatgtgcg-catcaaacacatgataggattaat 441  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  54819705 gttatcatgtgcgacatcaaacacatgataggattaat 54819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 33072808 - 33072848
Alignment:
Q  239 atcattccttatttattatcttgatattctgttatttttaa 279  Q
    ||||||| |||||||||||||||||||||||  ||||||||    
T  33072808 atcattcattatttattatcttgatattctgccatttttaa 33072848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 52 - 339
Target Start/End: Original strand, 23404450 - 23404736
Alignment:
Q  52 gttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 151  Q
    ||||| ||||||| | ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  23404450 gttcgattgatggccaggatagggagacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaa 23404549  T
Q  152 tcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatt 251  Q
     ||||||  |||| |||  |||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||| |||    ||| || || |||||| |||    
T  23404550 ccatttccatatcatatcctgactttcctttgtaatttatatcttgagtataggctaagttagaaattatcctgattgacttaaaagattattcctaatt 23404649  T
Q  252 tattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 339  Q
    ||||||||||||||||||  |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  23404650 tattatcttgatattctgccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 23404736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 87 - 333
Target Start/End: Original strand, 9314806 - 9315051
Alignment:
Q  87 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 186  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||| |||||  ||||| |||  |||||||||||||| |    
T  9314806 gatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaa-taaaccattttcctatcctatcctgactttcctttgtaa 9314904  T
Q  187 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattg 286  Q
    |||  ||| | |||||| ||||| ||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||      
T  9314905 tttcaatcctgagtataggctgaattagaaattatcctggtgagattagaagatcattccttatttattatcttgatattctgccatttttaaaatatca 9315004  T
Q  287 tcgtttttaaaataatgatagcatgcattttctattataatcaataa 333  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||    
T  9315005 tcatttttaaaataatgatagcatgtattttctattataattaataa 9315051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 48 - 317
Target Start/End: Original strand, 12255070 - 12255339
Alignment:
Q  48 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 147  Q
    |||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  12255070 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaa 12255169  T
Q  148 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 247  Q
    |||| |||||  ||||| |||| || ||||||||||| |||| ||   | |||||| |||| |||| ||||||||  |||| |||||||| || ||||||    
T  12255170 taaaccattttcctatcctattctgtctttcctttgtaatttctaatctgagtataggctgggttaaaaattatcatgatgggattagaagataattcct 12255269  T
Q  248 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatttt 317  Q
    |||||||||||||||||||||||  |||||||||||||||   ||||||||||||||||||||| |||||    
T  12255270 tatttattatcttgatattctgtcctttttaaaatattgttacttttaaaataatgatagcatgtatttt 12255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 56 - 336
Target Start/End: Complemental strand, 10789618 - 10789337
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa-taaatca 154  Q
    ||||||||||| |||||  |||| |  ||| |||||||||||||||| ||||||||||||||| |||||||||| | || |||| ||||||| |||| ||    
T  10789618 gtttgatggtcaggataaagagacagaatatgatacattaatcatattctgcttaaatttcatatttgatgcacgagagagataagataaaaataaacca 10789519  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||   ||| ||||  ||| |||||||||| |||| ||||   |||||| | || |||||||||||| | |||| ||||| |||||||||||||||||||    
T  10789518 ttttcttattttatcctgattttcctttgtaatttctatccagagtataggttgggttataaattattctgatgggattataatatcattccttatttat 10789419  T
Q  255 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  10789418 tatcttgatattctgctatttttaaaatattgtcatttttaaaataataatagcatgtattttctattataattaataacat 10789337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 49 - 336
Target Start/End: Complemental strand, 29979597 - 29979314
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    ||||| |||||||||||| |||| |||||| | || | ||||||||||||||||| || |||||| |||||||||||||||||||| |||| ||||||||    
T  29979597 agggtccgtttgatggtcaggatcgggagaca-gaaatgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaat 29979499  T
Q  149 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 248  Q
    ||| |||||  ||||| |||| ||| |||||||||| |||| |||| | ||||   |||| |||| ||||||| |   |||||||| || ||||||||||    
T  29979498 aaaccattttcctatcatattatgattttcctttgtaatttctatcctgagtaccggctgggttagaaattattc---tgagattaaaagatcattcctt 29979402  T
Q  249 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29979401 atttattatcttgatattctaccatttttaaaatattgtcatttttaaaataatgatagcatgtattttctatcataattaataacat 29979314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 55 - 339
Target Start/End: Original strand, 32329317 - 32329590
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||||||||| ||||||||||  |  ||| |||||||||||| ||| ||| ||||||  ||||||||||||||||||| |||| ||||||||||| ||    
T  32329317 cgtttgatggtcaggatagggaggcagaatatgatacattaatcgtattctgtttaaatcgcatgtttgatgcaccaaag-gatatgataaaataaacca 32329415  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 254  Q
    |||   ||||||||  |||||||||||||| ||||||||| | | |||| |||| |||| |||||||          |||||| ||||||||||||||||    
T  32329416 ttttcatatcttatcctgactttcctttgtaatttatatcctgaatatatgctgggttagaaattat----------ttagaagatcattccttatttat 32329505  T
Q  255 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 339  Q
    ||| ||||||||||   ||||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  32329506 tatgttgatattctaccattttgaaaatattgtcatttttaaaatgatgatagcatgtattttctattataattaataacatacc 32329590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 24660938 - 24660738
Alignment:
Q  106 gcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgacttt-cctttgtcatttatatcataagtataa 204  Q
    |||||||| |||| |||||| |||||||| |||| |||||| |||| ||||| |||||  ||| |||  ||| ||||||| |||| |||| | |||||||    
T  24660938 gcttaaatctcatatttgatacaccaaagagatatgataaattaaaccatttttctatactatcttggtttttcctttgtaatttgtatcctgagtataa 24660839  T
Q  205 gctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatga 304  Q
    |||||||||  || ||||| ||   |||||||| || || |||||||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||    
T  24660838 gctgagttaggaactatcctgaaaggattagaaaat-ataccttatttattatcatgatattctatcatttttaaaatgttgtcatttttaaaataatga 24660740  T
Q  305 ta 306  Q
    ||    
T  24660739 ta 24660738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 391289 - 391236
Alignment:
Q  230 gattagaatatcattccttatttattatcttgatattctgttatttttaaaata 283  Q
    |||||||| |||||||||||||||||||||||||||| ||  ||||||||||||    
T  391289 gattagaagatcattccttatttattatcttgatattttgccatttttaaaata 391236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 12267316 - 12267413
Alignment:
Q  57 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    |||||| ||| | ||| ||||| ||||||  ||| |||||| |||||||| |||||||| |||||||||||||||||  |||| ||| ||||||||||    
T  12267316 tttgattgtcagaatatggagacatgatattatatattaattatatcctgtttaaattttatgtttgatgcaccaaacagatatgatgaaataaatca 12267413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 9315123 - 9315159
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  9315123 gttatcatgtgcgcatcaaacacatgataggattaat 9315159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 391246 - 391200
Alignment:
Q  290 tttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  391246 tttttaaaataattatagcatgtattttctattataattaataacat 391200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 12255428 - 12255464
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12255428 gttatcatgtgcgcatcaaacacatgataagattaat 12255464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 391131 - 391095
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||||| |||||||||||||||| |||||||    
T  391131 gttatcatgtgcacatcaaacacatgataagattaat 391095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 10789269 - 10789233
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    |||||||||| |||||||||||||||||| |||||||    
T  10789269 gttatcatgttcgcatcaaacacatgataagattaat 10789233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 32329655 - 32329691
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  32329655 gttatcatgtgcgtatcaaacacatgatatgattaat 32329691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 8e-69; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 55 - 336
Target Start/End: Complemental strand, 18503274 - 18502991
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 154  Q
    ||||||||||||  ||||| |||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  18503274 cgtttgatggtcatgatagagagatcggatatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaacca 18503175  T
Q  155 tttctctatcttattttgactttcctttgtcatttatatcataagtataa--gctgagttataaattatccagatgagattagaatatcattccttattt 252  Q
    |||  ||||| |||  ||| |||| ||||| |||| |||| | ||||||   |||| |||| ||||||| | |||| |||||||| ||||||| |||||     
T  18503174 ttttcctatcctatcctgattttcatttgtaatttctatcttgagtatataggctgtgttagaaattatgctgatgggattagaagatcattctttatta 18503075  T
Q  253 attatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    |||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  18503074 attatcttgatattctgccatttttgaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataacat 18502991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 56 - 337
Target Start/End: Complemental strand, 15673149 - 15672876
Alignment:
Q  56 gtttgatggtccggatagggagatatgatacgatacattaatcatat--cctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 153  Q
    |||||||||||  |||||||||  | |||| ||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||| |    
T  15673149 gtttgatggtcaagatagggaggcaggatatgatacattaatcatatatcctgcttaaatctcatgtttgatgcaccaaagagataggataaaataaacc 15673050  T
Q  154 atttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttattta 253  Q
    ||||  ||||| |||  |||||||||||||  ||||||||       ||| |||| |||| |||||||||   ||||||||||| |||||||||||||||    
T  15673049 attttcctatcatatcctgactttcctttgcaatttatat-------ataggctgggttagaaattatcc---tgagattagaagatcattccttattta 15672960  T
Q  254 ttatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 337  Q
    |||||||||||||||   ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15672959 ttatcttgatattctaacattttgaaaatattgttatttttaaaataatgatagcatgtattttctattataattaataacata 15672876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 87 - 339
Target Start/End: Original strand, 34703033 - 34703288
Alignment:
Q  87 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 186  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||   ||| |||||||||||  ||||  ||||| |||  |||||||||||||| |    
T  34703033 gatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaaagtatatgataaaataaactattttcctatcatatcctgactttcctttgtaa 34703132  T
Q  187 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatc-ttgatattctgttatttttaaaatatt 285  Q
    |||||||||| || ||| | || |||| ||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||  |||||| ||||||||    
T  34703133 tttatatcatgaggataggttgggttagaaactatcctgatgggattagaagatcattccttatttattatctttgatattctactattttgaaaatatt 34703232  T
Q  286 gtcgtttttaaaataatgatagc--atgcattttctattataatcaataacatacc 339  Q
    ||| |||||||||||||||||||  ||| ||||||||||||||| |||| ||||||    
T  34703233 gtcatttttaaaataatgatagcatatgtattttctattataattaatagcatacc 34703288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 6110160 - 6110261
Alignment:
Q  108 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagct 207  Q
    |||||| |||||||||||||| ||||| |||| ||||||||||||||||| |||||| ||| || |||||||||||| ||||||||| | ||||||||||    
T  6110160 ttaaatctcatgtttgatgcatcaaagggataagataaaataaatcatttttctatcctatcttaactttcctttgtaatttatatcctgagtataagct 6110259  T
Q  208 ga 209  Q
    ||    
T  6110260 ga 6110261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 34866447 - 34866358
Alignment:
Q  247 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 336  Q
    ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  34866447 ttatttattatattgatattctgccatttttataatattgttatttttaaaataatgattgcatgtattttctattataattaataacat 34866358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 3480908 - 3480709
Alignment:
Q  70 atagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata-aaataaatcatttctctatcttat 168  Q
    |||| ||||||||||| |||| |||||||||||| ||| ||||| |||||||| ||||| || |||||||  ||| |||||||||||||  |||||||||    
T  3480908 atagagagatatgatatgatatattaatcatatcatgcataaatctcatgtttaatgcatcatagtgataatatagaaataaatcattttcctatcttat 3480809  T
Q  169 tttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattct 268  Q
      ||| || || |||| |||| |||| | || |||| ||  |||| ||  ||||  ||||||||||| |  ||||||||||||||||||| | |||||||    
T  3480808 cgtgatttgccattgtaatttttatcttgagcataaactatgttagaatctatcttgatgagattagcaattcattccttatttattatcataatattct 3480709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 32585946 - 32585825
Alignment:
Q  53 ttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaat 152  Q
    |||||||||||| |  |||||||||  |  ||| ||||||  |||||||||||| |||||| |||||||||||||| |||| ||||| ||||||||||||    
T  32585946 ttcgtttgatggccacgatagggaggcaaaatatgatacaagaatcatatcctgtttaaatctcatgtttgatgcaacaaaatgatatgataaaataaat 32585847  T
Q  153 catttctctatcttattttgac 174  Q
     ||||  |||||||||| ||||    
T  32585846 aattttcctatcttattctgac 32585825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 25102600 - 25102707
Alignment:
Q  55 cgtttgatggtccggatagggaga-----tatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaata 149  Q
    |||||||||||| |||||||||||     ||||||| |||| ||| |||| || || ||||||| |||||||||||||||||||  ||||||||||||||    
T  25102600 cgtttgatggtcgggatagggagacatgatatgatatgatatatttatcacattctacttaaatctcatgtttgatgcaccaaatagataggataaaata 25102699  T
Q  150 aatcattt 157  Q
    ||| ||||    
T  25102700 aattattt 25102707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 306
Target Start/End: Original strand, 28428933 - 28429160
Alignment:
Q  80 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcc 179  Q
    |||||| |||| ||| |||| ||| || |||||| | |||||| |||||||||||  |||||||||||||||| ||||    |||||||  | ||||  |    
T  28428933 atgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagaaataggataaaataaattattttgtaatcttatcctaacttatc 28429032  T
Q  180 tttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaa 279  Q
    ||||| ||||||||  ||| |||| | |  |||  |||||||||  ||  ||||| ||  |||||||||| |||||||| ||||||||||  ||||||||    
T  28429033 tttgtaatttatattttaaatatatgttaggtttgaaattatcctaataggattataaattcattccttagttattatcatgatattctgccatttttaa 28429132  T
Q  280 aata-ttgtcgtttttaaaataatgata 306  Q
    |||| || || |||||||||||||||||    
T  28429133 aatatttctcatttttaaaataatgata 28429160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 24429450 - 24429348
Alignment:
Q  49 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 148  Q
    |||||| ||||||||||| |||||| ||| || |||| || | ||  ||||||||||| ||||||  |||||||||||||| |||| |||||||||||||    
T  24429450 agggtttgtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatcacatgtttgatgcactaaagggataggataaaat 24429351  T
Q  149 aaa 151  Q
    |||    
T  24429350 aaa 24429348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 6110261 - 6110305
Alignment:
Q  239 atcattccttatttattatcttgatattctgttatttttaaaata 283  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  6110261 atcattccttatttattatcttgatattctgtcatttttaaaata 6110305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 17508733 - 17508667
Alignment:
Q  234 agaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaata 300  Q
    |||| |||||||||||||||||||| |||| |||||  ||||||||||| ||||| |||||| ||||    
T  17508733 agaagatcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatttttataata 17508667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 17544481 - 17544547
Alignment:
Q  234 agaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaata 300  Q
    |||| |||||||||||||||||||| |||| |||||  ||||||||||| ||||| |||||| ||||    
T  17544481 agaagatcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatttttataata 17544547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 15524351 - 15524263
Alignment:
Q  75 gagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatc 164  Q
    |||||| |||| |||| |||||||||||| |  |||||| ||||||||| ||||||| ||||| ||||| ||||||| ||||| ||||||    
T  15524351 gagataagatatgatatattaatcatatcttatttaaatctcatgtttggtgcaccagagtgagaggat-aaataaaccatttttctatc 15524263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 31804816 - 31804759
Alignment:
Q  230 gattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgt 287  Q
    ||||||||  ||||||||||||||||||| ||||||| ||| ||||||||||| ||||    
T  31804816 gattagaaattcattccttatttattatcctgatattatgtcatttttaaaatgttgt 31804759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 34866289 - 34866253
Alignment:
Q  405 gttatcatgtgcgcatcaaacacatgataggattaat 441  Q
    ||||||||||||||||||||||||||||| |||||||    
T  34866289 gttatcatgtgcgcatcaaacacatgataagattaat 34866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 288
Target Start/End: Complemental strand, 4127 - 3936
Alignment:
Q  96 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatca 195  Q
    ||||||||| |||||||| |||||||||||||||||||| | | ||||||||||||  ||||  |||||||||  | ||||  |||||| |||| ||||     
T  4127 atcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttttatct 4029  T
Q  196 taagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtc 288  Q
    |||||||||| ||||||  ||| ||||  |||  ||||| ||  ||||||||| ||||||| | ||||||| | |  ||||||||||||||||    
T  4028 taagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaaatattgtc 3936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 288
Target Start/End: Original strand, 3975 - 4166
Alignment:
Q  96 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatca 195  Q
    ||||||||| |||||||| |||||||||||||||||||| | | ||||||||||||  ||||  |||||||||  | ||||  |||||| |||| ||||     
T  3975 atcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttttatct 4073  T
Q  196 taagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtc 288  Q
    |||||||||| ||||||  ||| ||||  |||  ||||| ||  ||||||||| ||||||| | ||||||| | |  ||||||||||||||||    
T  4074 taagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaaatattgtc 4166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 62 - 1
Alignment:
Q  55 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttc 116  Q
    |||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  62 cgtttgatggccaggatagggagacatgatatgatacattaatcatattctgcttaaatttc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 1659 - 1735
Alignment:
Q  92 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttat 168  Q
    |||||||||||| |  |||||| | ||||||| |||||||||| |||||||| ||||||||||||| ||||||||||    
T  1659 attaatcatatcttatttaaatcttatgtttggtgcaccaaagagataggatgaaataaatcatttttctatcttat 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 1816 - 1871
Alignment:
Q  247 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataat 302  Q
    ||||||||| || ||||||||| | ||||||||||| ||||| |||||||||||||    
T  1816 ttatttattttcatgatattctatcatttttaaaattttgtcatttttaaaataat 1871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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