View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11544_low_1 (Length: 416)
Name: NF11544_low_1
Description: NF11544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11544_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 50082890 - 50082505
Alignment:
| Q |
11 |
cagagataagaataagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgt |
110 |
Q |
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| T |
50082890 |
cagagataagaataagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgt |
50082791 |
T |
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| Q |
111 |
tggatgatgttcatagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttatt |
210 |
Q |
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| T |
50082790 |
tggatgatgttcatagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttatt |
50082691 |
T |
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| Q |
211 |
atatttatatatcctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctcc |
310 |
Q |
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| T |
50082690 |
a---ttatatatcctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctcc |
50082594 |
T |
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| Q |
311 |
atgctttcatttattttagggctagaatgcaattaatcatctcaagataagaaaatgtgggtatgttaaataatagtatatattattat |
399 |
Q |
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| T |
50082593 |
atgctttcatttattttagggctagaatgcaattaattatctcaagataagaaaatgtgggtatgttaaataatagtatatattattat |
50082505 |
T |
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