View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11544_low_2 (Length: 348)
Name: NF11544_low_2
Description: NF11544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11544_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 27168492 - 27168170
Alignment:
| Q |
18 |
atcactaacctcagcgttaatcttttccaacccataagtaacgtgttctggaagcaaaccaccgtggacgaaaatcgagtcaccaactaccaacacagta |
117 |
Q |
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| T |
27168492 |
atcactaacttcagcgttaatcttttccaacccataagtaacgtgttctggaagcaaaccaccgtggacgaaaatcgagtcaccaactaccaacacagta |
27168393 |
T |
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| Q |
118 |
gcattgtgggacaagaaccttccagaaatcgggccattgggtctca--gctgcaaccctagcactaaggccatcatgaaatttcttccttaagccgctaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27168392 |
gcattgtgggacaagaaccttccagaaatcgggccattgggtctcaacgctgcaaccctagcactaaggccatcatgaaatttcttccttacgccgctaa |
27168293 |
T |
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| Q |
216 |
attccacgtgaataccttctaagggatctttcggcggtttcaaaccgtggcaaagactcttcatcatgttaccttggcggaaccattctaaccaaaccct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27168292 |
attccacgtgaataccttctaagggatctttcggcggtttcaaaccgtggcaaagactcttcatcatgttaccttggcggaaccattctaaccaaaccct |
27168193 |
T |
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| Q |
316 |
aaattccttaacaccagcctttg |
338 |
Q |
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|||||||||||||||||| |||| |
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| T |
27168192 |
aaattccttaacaccagcttttg |
27168170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 484797 - 484618
Alignment:
| Q |
18 |
atcactaacctcagcgttaatcttttccaacccataagtaacgtgttctggaagcaaaccaccgtggacgaaaatcgagtcaccaactaccaacacagta |
117 |
Q |
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||||||||||||| | |||||||| |||||||||||| ||| |||||| | ||||||||| || || |||||||| |||||||||||||| |||||| |
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| T |
484797 |
atcactaacctcaccattaatcttctccaacccataatcaacatgttctttcaacaaaccaccatgaacaaaaatcgaatcaccaactaccaaaacagta |
484698 |
T |
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| Q |
118 |
gcattgtgggacaagaaccttccagaaatcgggccattgggtct--cagctgcaaccctagcactaaggccatcatgaaa |
195 |
Q |
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|||| || | ||||||||| |||||||| ||||| || || ||| ||||||||||| |||| ||||||||||| |
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| T |
484697 |
acattttgtgtaaagaacctttttgaaatcggcccattcggccttaaagccgcaaccctagccctaaacccatcatgaaa |
484618 |
T |
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