View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11544_low_3 (Length: 335)
Name: NF11544_low_3
Description: NF11544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11544_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2519296 - 2519443
Alignment:
| Q |
1 |
aaaatgccatggtgacggttaaaacctagcatcccatagtcattaatattgttgtagtggttgtagtctccctcgtcattgacgaacttgacgatgcgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
2519296 |
aaaatgccatggtgacggttaaaacctagcatcccatactcattaatattgttgtagtggttgtagtctccctcgtcgttgaggaacttgacaatgcgct |
2519395 |
T |
|
| Q |
101 |
cccataactcctccggtaaatatgaacatgatgttgctgctgctgcca |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2519396 |
cccataactcctccggtaaatatgaacatgatgttgctgctgctgcca |
2519443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 2520374 - 2520448
Alignment:
| Q |
243 |
ctttcttattattatgggtgataatttaggcccattgtggctctttaacgaaagcaatggtcgataaaatgtgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2520374 |
ctttcttattattatgggtgataatttaggcccattgtgtctctttaactaaagcaatggtcgataaaatgtgaa |
2520448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 2467621 - 2467734
Alignment:
| Q |
17 |
ggttaaaacctagcatcccatagtcattaatattgttgtagtggttgtagtctccctcgtcattgacgaacttgacgatgcgctcccataactcctccgg |
116 |
Q |
| |
|
||||| || ||||||||||||| |||| |||||||||| | ||||| ||| || | ||| |||| ||| |||| |||||||||||||||||||| || |
|
|
| T |
2467621 |
ggttagaagctagcatcccatattcatcaatattgttgaacatgttgttgtcgccgttgtcgttgaggaatttgaagatgcgctcccataactcctttgg |
2467720 |
T |
|
| Q |
117 |
taaatatgaacatg |
130 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2467721 |
taaatatgaacatg |
2467734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 5102005 - 5101951
Alignment:
| Q |
73 |
tcgtcattgacgaacttgacgatgcgctcccataactcctccggtaaatatgaac |
127 |
Q |
| |
|
||||| |||| ||| |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
5102005 |
tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaac |
5101951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 2528736 - 2528789
Alignment:
| Q |
246 |
tcttattattatgggtgataatttaggcccattgtggctctttaacgaaagcaa |
299 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
2528736 |
tcttattattatggttaataatttaggcccatagtggccctttaaccaaagcaa |
2528789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 2536905 - 2536950
Alignment:
| Q |
246 |
tcttattattatgggtgataatttaggcccattgtggctctttaac |
291 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
2536905 |
tcttattatcatgggttataatttaggcccatagtggccctttaac |
2536950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 2519488 - 2519528
Alignment:
| Q |
193 |
aacacgaagaaaataacaaagattctactgtgtgatgatta |
233 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
2519488 |
aacacgaaaagaataacaaagattctactgtgtgataatta |
2519528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 2525941 - 2525997
Alignment:
| Q |
71 |
cctcgtcattgacgaacttgacgatgcgctcccataactcctccggtaaatatgaac |
127 |
Q |
| |
|
||||||| |||| ||| |||| |||| | |||||||||||||| ||||||||||||| |
|
|
| T |
2525941 |
cctcgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatgaac |
2525997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University