View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11545_low_12 (Length: 210)
Name: NF11545_low_12
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11545_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 34550259 - 34550408
Alignment:
| Q |
15 |
catagggacaattatgattttaaacaagaatgagtggtatgctaccttaagaaacaaagaaaaaatgtatataaagaagcatatgcgaagaacttgtgaa |
114 |
Q |
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| T |
34550259 |
catagggacaattatgattttaaacaagaatgagtggtatgctaccttaagaaacaaagaaaaaatgtatataaagaagcatatgcgaagaacttgagaa |
34550358 |
T |
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| Q |
115 |
gaagaaacaaattacgtaccttcctttactacaattttcttctgaaagtt |
164 |
Q |
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| T |
34550359 |
gaagaaacaaattacgtaccttcctttactacaattttcttctgaaagtt |
34550408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 29222203 - 29222079
Alignment:
| Q |
19 |
gggacaattatgattt-taaacaagaatgagtggtatgctaccttaagaaacaaagaaaaaatgta----tataaagaagcatatgcgaagaacttgtga |
113 |
Q |
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| T |
29222203 |
gggaccattatgatttgtaaacaagaatgagtggtatgttaccttaagaaacaaagaagaaagaaaaaagtataaagaagcatacgggaagaatttgtga |
29222104 |
T |
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| Q |
114 |
agaagaaa-caaattacgtaccttc |
137 |
Q |
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| T |
29222103 |
agaagaaaccaaattacgtaccttc |
29222079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 29252016 - 29251975
Alignment:
| Q |
102 |
aagaacttgtgaagaagaaacaaattacgtaccttcctttac |
143 |
Q |
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| T |
29252016 |
aagaacttgtgaagaagaaacaaattacgtaccttcctttac |
29251975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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