View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11545_low_2 (Length: 390)
Name: NF11545_low_2
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11545_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 27 - 372
Target Start/End: Complemental strand, 38095386 - 38095041
Alignment:
| Q |
27 |
tacgtaaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgat |
126 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38095386 |
tacgtaaaagcaataacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgat |
38095287 |
T |
|
| Q |
127 |
gcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgcttttggac |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38095286 |
gcctaaacgtgataaatattcaattttaggatgaaggaagcgattgtaattcacatcaacataataaagttggatgaattgcttaatgttgcttttggac |
38095187 |
T |
|
| Q |
227 |
aattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaatgcaggaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38095186 |
aattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaatgcaggaa |
38095087 |
T |
|
| Q |
327 |
tcaaagaaatagaaacaaatcgattgaaaatctgaacccattagct |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38095086 |
tcaaagaaatagaaacaaatcgattgaaaatctgaacccattagct |
38095041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 26788842 - 26788803
Alignment:
| Q |
100 |
cttagcttttgaggcgtgaagtttgatgcctaaacgtgat |
139 |
Q |
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| T |
26788842 |
cttagcttttgaggcgtgaagtttgatccctaaacgtgat |
26788803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 32 - 363
Target Start/End: Complemental strand, 47955836 - 47955509
Alignment:
| Q |
32 |
aaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatgccta |
131 |
Q |
| |
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||||| || |||||||| || ||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |
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| T |
47955836 |
aaaaggaataacaatgattatcttctacctagtgaaaaatggattaatggaaagaactgaaataaaacctcagcttttgaggcgtgaagtttgatgc-tc |
47955738 |
T |
|
| Q |
132 |
aacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgcttttggacaatta |
231 |
Q |
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||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||| | |||| |
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| T |
47955737 |
aacataaaaaatattcaattttaggatgaaggaagtgattgtaattcacatcaacataataaaattggatgaattgcttaacgtggcttttgcagaattg |
47955638 |
T |
|
| Q |
232 |
gagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaatgcaggaatcaaa |
331 |
Q |
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||||||||| | ||| ||| ||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
47955637 |
gagaaggaattagatagattgaaactg-aaattctaggttgaaaaaatagataaaccaaattcaagaggatgaagaata--attaagtgcatcaatcaaa |
47955541 |
T |
|
| Q |
332 |
gaaatagaaacaaatcgattgaaaatctgaac |
363 |
Q |
| |
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||||| ||||||| ||||||||||||||||| |
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| T |
47955540 |
gaaatctaaacaaaccgattgaaaatctgaac |
47955509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 26179496 - 26179316
Alignment:
| Q |
27 |
tacgtaaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgat |
126 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26179496 |
tacgtaaaagcaataacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgat |
26179397 |
T |
|
| Q |
127 |
gcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattg |
207 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26179396 |
gcctaaacgtgatagatattcaattttaggatgaaggaagcgattgtaattcacatcaacataataaagttggatgaattg |
26179316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 108 - 311
Target Start/End: Original strand, 2757878 - 2758080
Alignment:
| Q |
108 |
ttgaggcgtgaagtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattg |
207 |
Q |
| |
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|||| ||||||||||||||| |||||| | ||||||||||||| || |||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2757878 |
ttgaagcgtgaagtttgatgtctaaacataataaatattcaatatttggatgaagcaagtgattttaattcacatcaacataataaagttggatgaattg |
2757977 |
T |
|
| Q |
208 |
cttaatgttgcttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaaga |
307 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||| || ||||||||||| ||||| || ||||||||| | ||||||||||||||||||||||||||| |
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| T |
2757978 |
cttaatgttgcttttgtagaattggagaaggaagtgaattgatagaaactg-aaattctaagttgaaaaactagataaaccaaattcaagaggatgaaga |
2758076 |
T |
|
| Q |
308 |
ataa |
311 |
Q |
| |
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|||| |
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| T |
2758077 |
ataa |
2758080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 66 - 371
Target Start/End: Complemental strand, 32019600 - 32019298
Alignment:
| Q |
66 |
aaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatgcctaaacgtgataaatattcaattttaggatgaaggaa |
165 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||||| ||||||||||| |
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| T |
32019600 |
aaaaaaggcttaatggaaagacctgagataaaaccttagcttttgaggcgagaagtttgatgtctatacgtaataaatat-caatttttggatgaaggaa |
32019502 |
T |
|
| Q |
166 |
gcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc-ttttggacaattagagaaggaagtggatggatagaaactgaaaatt |
264 |
Q |
| |
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| ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||||||||| ||||| |
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| T |
32019501 |
gtgattttaattcacatcgacataataaagttggatgaattgcttaatgttgctttttgcggaattggagaaggaagtgaattgatagaaactg-aaatt |
32019403 |
T |
|
| Q |
265 |
ttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaatgcaggaatcaaagaaatagaaacaaatcgattgaaaatctgaacc |
364 |
Q |
| |
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| ||||||||| | ||||||||||||| |||||||||||||||| ||||| | || |||||||||||||||||||||| ||||||||| ||||| |
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| T |
32019402 |
ctttgttgaaaaactagataaaccaaattgaagaggatgaagaata--attaagtccataaatcaaagaaatagaaacaaatgaattgaaaatatgaact |
32019305 |
T |
|
| Q |
365 |
cattagc |
371 |
Q |
| |
|
||||||| |
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| T |
32019304 |
cattagc |
32019298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 40642253 - 40642213
Alignment:
| Q |
330 |
aagaaatagaaacaaatcgattgaaaatctgaacccattag |
370 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| |||||| |
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|
| T |
40642253 |
aagaaatagaaacaaatcgattgcaaatttgaactcattag |
40642213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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