View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11545_low_3 (Length: 336)

Name: NF11545_low_3
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11545_low_3
NF11545_low_3
[»] chr2 (13 HSPs)
chr2 (3-328)||(36038839-36039164)
chr2 (81-318)||(2610157-2610395)
chr2 (162-318)||(8180409-8180565)
chr2 (162-310)||(11992603-11992751)
chr2 (153-298)||(38453108-38453253)
chr2 (166-318)||(4807221-4807373)
chr2 (251-326)||(23866276-23866351)
chr2 (274-320)||(17581099-17581145)
chr2 (6-79)||(24583950-24584023)
chr2 (180-317)||(37281739-37281876)
chr2 (275-319)||(13592958-13593002)
chr2 (3-79)||(32443479-32443555)
chr2 (180-328)||(41763564-41763712)
[»] chr3 (12 HSPs)
chr3 (3-314)||(27917205-27917513)
chr3 (209-328)||(19757687-19757806)
chr3 (233-328)||(32490292-32490387)
chr3 (122-316)||(48221415-48221609)
chr3 (162-318)||(38849723-38849879)
chr3 (162-318)||(47542208-47542364)
chr3 (163-298)||(26489966-26490101)
chr3 (251-316)||(19736797-19736862)
chr3 (246-318)||(51448290-51448362)
chr3 (246-318)||(52138457-52138529)
chr3 (166-328)||(25190998-25191160)
chr3 (145-202)||(29817249-29817306)
[»] chr4 (15 HSPs)
chr4 (153-318)||(31960302-31960467)
chr4 (263-319)||(41427467-41427523)
chr4 (231-328)||(47265770-47265867)
chr4 (162-318)||(23906798-23906954)
chr4 (166-317)||(33226839-33226990)
chr4 (263-318)||(53707423-53707478)
chr4 (246-318)||(435858-435930)
chr4 (246-318)||(48174674-48174746)
chr4 (246-318)||(48623108-48623180)
chr4 (162-318)||(56374919-56375075)
chr4 (145-297)||(55578687-55578836)
chr4 (239-296)||(10775993-10776050)
chr4 (248-313)||(55768960-55769025)
chr4 (248-313)||(55833216-55833281)
chr4 (246-318)||(1777596-1777668)
[»] chr5 (12 HSPs)
chr5 (162-318)||(2075971-2076127)
chr5 (162-318)||(20318620-20318776)
chr5 (162-318)||(24178153-24178309)
chr5 (162-328)||(3394329-3394495)
chr5 (163-318)||(1274894-1275049)
chr5 (263-328)||(16348000-16348065)
chr5 (269-318)||(28977461-28977510)
chr5 (162-318)||(12492884-12493040)
chr5 (213-316)||(8228420-8228523)
chr5 (163-318)||(10638926-10639081)
chr5 (246-328)||(25937690-25937773)
chr5 (246-328)||(3301468-3301550)
[»] chr1 (14 HSPs)
chr1 (162-328)||(32066768-32066931)
chr1 (162-318)||(51441261-51441417)
chr1 (163-318)||(1210374-1210529)
chr1 (162-318)||(43240878-43241034)
chr1 (230-315)||(12807652-12807737)
chr1 (162-328)||(32083242-32083408)
chr1 (246-318)||(51601687-51601759)
chr1 (263-318)||(49347992-49348047)
chr1 (117-216)||(51234345-51234444)
chr1 (274-321)||(52641060-52641107)
chr1 (3-81)||(8391635-8391713)
chr1 (145-298)||(34827582-34827735)
chr1 (1-45)||(1661325-1661369)
chr1 (246-318)||(8671549-8671621)
[»] chr8 (5 HSPs)
chr8 (145-313)||(13984669-13984836)
chr8 (162-318)||(36565738-36565894)
chr8 (153-317)||(12492330-12492494)
chr8 (263-318)||(36544781-36544836)
chr8 (81-119)||(30113612-30113650)
[»] chr7 (13 HSPs)
chr7 (162-318)||(31004853-31005008)
chr7 (162-318)||(46356348-46356504)
chr7 (162-318)||(33350303-33350459)
chr7 (162-298)||(36869786-36869922)
chr7 (163-298)||(38606654-38606789)
chr7 (269-318)||(11593589-11593638)
chr7 (231-328)||(32630226-32630323)
chr7 (162-318)||(36651623-36651779)
chr7 (246-318)||(37616545-37616617)
chr7 (1-79)||(7189572-7189650)
chr7 (184-318)||(24177714-24177848)
chr7 (162-328)||(48919007-48919173)
chr7 (246-318)||(49028896-49028968)
[»] chr6 (6 HSPs)
chr6 (243-319)||(3632644-3632720)
chr6 (153-328)||(5258638-5258813)
chr6 (81-328)||(5631436-5631685)
chr6 (153-318)||(10100345-10100510)
chr6 (162-298)||(20428133-20428269)
chr6 (272-318)||(33495836-33495882)
[»] scaffold0018 (1 HSPs)
scaffold0018 (263-318)||(31097-31152)
[»] scaffold0113 (1 HSPs)
scaffold0113 (246-328)||(12179-12261)
[»] scaffold0570 (1 HSPs)
scaffold0570 (246-298)||(2851-2903)
[»] scaffold0171 (1 HSPs)
scaffold0171 (246-298)||(5841-5893)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 328
Target Start/End: Complemental strand, 36039164 - 36038839
Alignment:
Q  3 caacacaacatcttcatctctactacgattactttattctcgtttagtttcttaaccaccctacactttgtaccatatatacaacatcgtcaatctgata 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  36039164 caacacaacatcttcatctctgctacgattactttattctcgtttagtttcttaaccacccaacactttgtaccatatatacaacatcgtcaatctgaca 36039065  T
Q  103 gttgttcgatagaatttcacttcagcttgagcggtgccttcctatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatg 202  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36039064 gttgtccgatagaatttcacttcagcttgagcggtgcctttgtatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatg 36038965  T
Q  203 gttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttat 302  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36038964 gttcaaatatgcttttgtttctttgtagttttgtaatatagatccaagatatttaaatgatgtaaattggggtatgatatgatcttcaactttcagttat 36038865  T
Q  303 aaggtagaactacttcgccctttgct 328  Q
    ||||||||||||||||||| ||||||    
T  36038864 aaggtagaactacttcgccttttgct 36038839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 318
Target Start/End: Complemental strand, 2610395 - 2610157
Alignment:
Q  81 atacaacatcgtcaatctgatagttgttcgatagaa-tttcacttcagcttgagcggtgccttcctatcacataaaacataagaggctcttctttatttt 179  Q
    |||||||| || || |||||  ||||| |||||||| ||||  |||| ||| || ||| | ||| |||| |||||||||   |||||||||||  ||||     
T  2610395 atacaacaacgccagtctgactgttgtccgatagaactttcctttcaacttaagtggtactttcttatcgcataaaacacctgaggctcttctccatttc 2610296  T
Q  180 aaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatga 279  Q
    ||||||||| |||| ||||||||||| | |||||||| | |||||||||  |||| ||  |  || |||| |||||||||   ||||| |||||||||||    
T  2610295 aaccacccagcttgaatatgatggtttacatctgcttctatttctctgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttggggtatga 2610196  T
Q  280 tatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||||||| |||||||||| |  |||||||| |||||||    
T  2610195 tatgatctccaactttcacctccaaggtagacctacttc 2610157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 8180565 - 8180409
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||||||| |  || ||||||||||||||      
T  8180565 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttataagaaggacccaaaatatttaaacc 8180466  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| |||| |||||||||||||| |||||||||| |  |||||||| |||||||    
T  8180465 gtgtaacttggagtatgatatgatctccaactttcacctccaaggtagacctacttc 8180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 11992603 - 11992751
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| |||| || | |||||||| | ||||||  |  |||| || |||||| |||| |||||||||      
T  11992603 gaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgtactatagacccaagatatttaaacc 11992702  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtaga 310  Q
     ||||| ||||||||||||||||||| |||||||||| | |||||||||    
T  11992703 gtgtaacttggggtatgatatgatctccaactttcacctctaaggtaga 11992751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 38453108 - 38453253
Alignment:
Q  153 aaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaat 252  Q
    |||||| | |||||||||||  |||| ||||||||| |||| ||||||||| | | || ||||| | |||||| ||  |||| ||  |  || |||| ||    
T  38453108 aaaacacatgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatatgcttctatttctccgtcattttgtatgaaggacccaagat 38453207  T
Q  253 atttaaatgatgtaaattggggtatgatatgatcttcaactttcac 298  Q
    ||||||||  ||||| ||||||||||||||||||| ||||||||||    
T  38453208 atttaaatcgtgtaacttggggtatgatatgatctccaactttcac 38453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 318
Target Start/End: Complemental strand, 4807373 - 4807221
Alignment:
Q  166 ctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgt 265  Q
    |||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  | ||| |||| |||||||||   |||    
T  4807373 ctcttctccatttcaaccacccatcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagacccaagatatttaaactgtgt 4807274  T
Q  266 aaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    || ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  4807273 aacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 4807221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 23866351 - 23866276
Alignment:
Q  251 atatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttg 326  Q
    ||||||||||  ||||| ||| |||||||||||||||  ||||||||| | |||| ||||||||||| ||| ||||    
T  23866351 atatttaaattgtgtaatttgtggtatgatatgatctctaactttcacatctaagttagaactactttgccttttg 23866276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 17581145 - 17581099
Alignment:
Q  274 gtatgatatgatcttcaactttcacttataaggtagaactacttcgc 320  Q
    ||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  17581145 gtatgatatgatctctaactttcacttctaaggtcgaactacttcgc 17581099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 24583950 - 24584023
Alignment:
Q  6 cacaacatcttcatctctactacgattactttattctcgtttagtttcttaaccaccctacactttgtaccata 79  Q
    |||||||||||||||||| ||||  |||||| |||||||| | |  |||||||| ||| ||| |||||||||||    
T  24583950 cacaacatcttcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattttgtaccata 24584023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 37281876 - 37281739
Alignment:
Q  180 aaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatga 279  Q
    |||||||||||||| ||| |||| || | |||| ||| | ||||||  |  ||||||| ||| || | || |||||||||   ||||| |||||||||||    
T  37281876 aaccacccaacttgaataggatgatttacatctacttctatttctccttcattttatactatggagctaagatatttaaaatgtgtaacttggggtatga 37281777  T
Q  280 tatgatcttcaactttcacttataaggtagaactactt 317  Q
     |||||||  ||||||||| |  |||||||||||||||    
T  37281776 catgatctcaaactttcacctccaaggtagaactactt 37281739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 13592958 - 13593002
Alignment:
Q  275 tatgatatgatcttcaactttcacttataaggtagaactacttcg 319  Q
    |||||||||||||||||||||||| | |||| | |||||||||||    
T  13592958 tatgatatgatcttcaactttcacctctaagtttgaactacttcg 13593002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 32443555 - 32443479
Alignment:
Q  3 caacacaacatcttcatctctactacgattactttattctcgtttagtttcttaaccaccctacactttgtaccata 79  Q
    ||||||||||||   | ||||| |||| |||||| |||||||| | | ||||||||||||| ||||| |||||||||    
T  32443555 caacacaacatccctaactctaatacgtttacttgattctcgtgttgattcttaaccacccaacactctgtaccata 32443479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 41763564 - 41763712
Alignment:
Q  180 aaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatga 279  Q
    ||||||||| |||| ||| |||| || | |||||||| | |||||| |   |||| || ||| || |||| ||||||||||  || || |||||||||||    
T  41763564 aaccacccagcttgaatacgatgatttacatctgcttctatttctccgacattttgtactatggacccaagatatttaaatcgtgcaacttggggtatga 41763663  T
Q  280 tatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    ||| |||| |||||||||| |  |||||||| | ||||| || ||||||    
T  41763664 tataatctccaactttcacctccaaggtagacccacttctccttttgct 41763712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 27917513 - 27917205
Alignment:
Q  3 caacacaacatcttcatctctactacgattactttattctcgtttagtttcttaaccaccctacactttgtaccatatatacaacatcgtcaatctgata 102  Q
    |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||  | |  ||||||||||||||    |||||||| |  | |||      
T  27917513 caacacaacatcctcatctctgctacgcttacttgattctcgttttggttcttaactgcacatcactttgtaccata----caacatcgccggtgtgact 27917418  T
Q  103 gttgttcgatagaatttcac-ttcagcttgagcggtgccttcctatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgat 201  Q
    | |||||||||||||||  | |||| ||| || ||| | ||  |||||||||||||| | ||||||||||| ||||| | | |||||||||| ||| |||    
T  27917417 gatgttcgatagaatttttcattcaacttaagtggtacttttttatcacataaaacacatgaggctcttctctatttcagctacccaacttgaatacgat 27917318  T
Q  202 ggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcactta 301  Q
    | || | || ||||| | |||||| ||  |||| || ||| ||  ||| |||||||||   ||||| ||||| ||||||||||||| |||||||||| |     
T  27917317 gatttatatatgcttatatttctccgtcattttgtactatggactcaagatatttaaaccgtgtaacttgggatatgatatgatctccaactttcacctt 27917218  T
Q  302 taaggtagaacta 314  Q
     ||||||||||||    
T  27917217 caaggtagaacta 27917205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 19757806 - 19757687
Alignment:
Q  209 atctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggta 308  Q
    ||||||| || |||||||||  |||| || ||| || |||| |||||||||  |||||| ||||||||||||||||||| |||||||||| |  ||||||    
T  19757806 atctgctcttatttctctgttattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacctccaaggta 19757707  T
Q  309 gaactacttcgccctttgct 328  Q
    | ||||||| ||| ||||||    
T  19757706 ggactactttgccttttgct 19757687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 32490292 - 32490387
Alignment:
Q  233 ttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    |||||||||||| |||| | ||||||||  ||||| ||| |||||||||||||||||||||||||  |||||| |||||  ||||| || ||||||    
T  32490292 ttataatatagacccaagaaatttaaattgtgtaacttgtggtatgatatgatcttcaactttcatctataagttagaaacacttcaccttttgct 32490387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 316
Target Start/End: Complemental strand, 48221609 - 48221415
Alignment:
Q  122 cttcagcttgagcggtgccttcctatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtt 221  Q
    ||||| ||||||| || | ||| ||||||| |||||||  |||| ||||||| |||| ||||| |||  ||| ||  |||| || | || ||||| |  |    
T  48221609 cttcaacttgagcagtactttcgtatcacacaaaacattggaggttcttcttcatttcaaccatccagtttgaattcgatgatttacatatgcttctact 48221510  T
Q  222 tctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactact 316  Q
    |||||||  |||| || |||  |||||| |||||||||   ||||| ||| |||||||||||||||||||||||||| | |||| ||||||||||    
T  48221509 tctctgtcattttgtactatgaatccaagatatttaaaatgtgtaacttgtggtatgatatgatcttcaactttcacctctaagatagaactact 48221415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 38849879 - 38849723
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| |||  |||| | | |||||||| | |||||| ||  |||| || | | || |||| |||||||||      
T  38849879 gaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtactgtggacccaagatatttaaacc 38849780  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||||||| ||||||||||||||| |||||||||| |  |||||||| |||||||    
T  38849779 gtgtaaattgaggtatgatatgatctccaactttcacctccaaggtagacctacttc 38849723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 47542208 - 47542364
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||||||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  47542208 gaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaacc 47542307  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||| ||||||| |||||||||| |  |||||||| |||||||    
T  47542308 gtgtaacttggggtatgaaatgatctccaactttcacctccaaggtagacctacttc 47542364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 26490101 - 26489966
Alignment:
Q  163 aggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatga 262  Q
    ||||| ||||| || | |||||| ||||||  |||||||| || | |||||||| | |||||| ||  |||||||  || || |||| |||||||||| |    
T  26490101 aggctattcttcatctcaaccactcaacttcaatatgatgatttacatctgcttctatttctccgtcattttatatcatggaaccaagatatttaaatca 26490002  T
Q  263 tgtaaattggggtatgatatgatcttcaactttcac 298  Q
    ||||| |||| |||||||||||||| | ||||||||    
T  26490001 tgtaacttggagtatgatatgatctcccactttcac 26489966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 19736862 - 19736797
Alignment:
Q  251 atatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactact 316  Q
    |||||||||  |||||| ||||||||||||||||||| |||||||||| |  ||||||| ||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaactttcacctccaaggtaggactact 19736797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 51448290 - 51448362
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  51448290 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 51448362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 52138529 - 52138457
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  52138529 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 52138457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 328
Target Start/End: Complemental strand, 25191160 - 25190998
Alignment:
Q  166 ctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgt 265  Q
    |||||||  |||| ||||||||| |||| ||| |||| || | || ||||| | ||||||  |  |||| || |||||| |||| |||||||||   |||    
T  25191160 ctcttctccatttcaaccacccagcttgaatacgatgatttacatttgcttctatttctccatcattttgtactatagacccaagatatttaaaccgtgt 25191061  T
Q  266 aaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    || ||||| ||||||||||||| |||||||||| |  |||||||| | ||||| || ||||||    
T  25191060 aacttgggctatgatatgatctccaactttcacctccaaggtagacccacttctccttttgct 25190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 29817306 - 29817249
Alignment:
Q  145 tatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatg 202  Q
    ||||||||||||||||| || || |||| ||||| |||||||||||||| ||| ||||    
T  29817306 tatcacataaaacataacagactattctctatttcaaccacccaacttgaatacgatg 29817249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 318
Target Start/End: Original strand, 31960302 - 31960467
Alignment:
Q  153 aaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaat 252  Q
    |||||||| |||||||||||  |||| ||||||||| |||| ||||||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| ||    
T  31960302 aaaacatatgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 31960401  T
Q  253 atttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||||||   ||||||||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  31960402 atttaaaccgtgtaaattggggtatgatatgatctccaactttcacctccaaggtagacctacttc 31960467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 41427523 - 41427467
Alignment:
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcg 319  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  41427523 tgtaacttggggtatgatatgatcttcaattttcacttttaaggtagaactacttcg 41427467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 47265770 - 47265867
Alignment:
Q  231 ttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    ||||||| ||| ||||||| |||||||||  |||||| |||||||||||||||| || |||||||||| |  |||||||| ||||||| || ||||||    
T  47265770 ttttatactatggatccaagatatttaaactatgtaacttggggtatgatatgacctccaactttcacctccaaggtagacctacttctccttttgct 47265867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 23906798 - 23906954
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  23906798 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaacc 23906897  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  23906898 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 23906954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 317
Target Start/End: Complemental strand, 33226990 - 33226839
Alignment:
Q  166 ctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgt 265  Q
    |||||||  |||| ||||||||| |||| ||||||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||   |||    
T  33226990 ctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgt 33226891  T
Q  266 aaattggggtatgatatgatcttcaactttcacttataaggtagaactactt 317  Q
    || ||||||||||||||||||| |||||||||| |  |||||||| ||||||    
T  33226890 aacttggggtatgatatgatctccaactttcacctccaaggtagacctactt 33226839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 53707478 - 53707423
Alignment:
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| |||||||||||||||||||||||||||||| |  |||||||| |||||||    
T  53707478 tgtaacttggggtatgatatgatcttcaactttcacctccaaggtagacctacttc 53707423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 435930 - 435858
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  435930 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 435858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 48174674 - 48174746
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  48174674 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 48174746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 48623108 - 48623180
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| ||||||||||  ||||| ||||||||||||||| ||| |||||||||| |  |||||||| |||||||    
T  48623108 ccaagatatttaaatcgtgtaatttggggtatgatatgctctccaactttcacctccaaggtagacctacttc 48623180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 56375075 - 56374919
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  56375075 gaggctcttctcaatttcaaccacccagcttgaatacgatggcttatatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaacc 56374976  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||| ||| |||||||||| |  |||||||| |||||||    
T  56374975 gtgtaacttggggtatgatatgctctccaactttcacctccaaggtagacctacttc 56374919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 297
Target Start/End: Complemental strand, 55578836 - 55578687
Alignment:
Q  145 tatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatataga 244  Q
    |||||||||||||||  || | ||||||  |||||||||||| |||||  ||| |||| || |  | ||||| | |||||| ||  ||||||| ||||||    
T  55578836 tatcacataaaacatctgaagatcttctccattttaaccacctaacttaaatacgatgatttatgtatgcttctatttctcagtcattttatactataga 55578737  T
Q  245 tccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttca 297  Q
    ||||| |||||||||| |   || ||| |||||||||||||||  ||||||||    
T  55578736 tccaagatatttaaatca---aatttgtggtatgatatgatctcaaactttca 55578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 10775993 - 10776050
Alignment:
Q  239 tatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttc 296  Q
    |||||| |||| |||||||||  |||||| ||| ||||||||||||||| ||||||||    
T  10775993 tatagacccaagatatttaaaccatgtaacttgtggtatgatatgatctccaactttc 10776050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 55768960 - 55769025
Alignment:
Q  248 aaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaact 313  Q
    ||||||||||||   ||| | ||| ||||||| |||||||||||||||||| | ||||||||||||    
T  55768960 aaaatatttaaaccgtgttacttgtggtatgacatgatcttcaactttcacctctaaggtagaact 55769025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 55833216 - 55833281
Alignment:
Q  248 aaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaact 313  Q
    ||||||||||||   ||| | ||| ||||||| |||||||||||||||||| | ||||||||||||    
T  55833216 aaaatatttaaaccgtgttacttgtggtatgacatgatcttcaactttcacctctaaggtagaact 55833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 1777596 - 1777668
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| ||||||||||||||||| | |||||||||| |  |||||||| |||||||    
T  1777596 ccaagatatttaaaacgtgtaacttggggtatgatatgatttccaactttcacctccaaggtagacctacttc 1777668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 2075971 - 2076127
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||| |||| |||||||||||||| ||| ||||| | | |||||||| | |||||||||  |||| ||  |  || |||| |||||||||      
T  2075971 gaggctcttcttcatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctctgtcattttgtacgaaggacccaagatatttaaacc 2076070  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  ||||||||||| ||||    
T  2076071 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagaactgcttc 2076127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 20318776 - 20318620
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||||||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  20318776 gaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaacc 20318677  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  ||||||||||||||||    
T  20318676 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagaactacttc 20318620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 24178309 - 24178153
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| |||||||||||||| ||||||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| || ||||||      
T  24178309 gaggctcttctccatttcaaccacccaacttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatctttaaacc 24178210  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| || |||||||||||||||| ||||||||||||  |||||||| |||||||    
T  24178209 gtgtaacttagggtatgatatgatctccaactttcacttccaaggtagacctacttc 24178153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 328
Target Start/End: Complemental strand, 3394495 - 3394329
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    ||||||| |||  |||| ||||||||| |||| ||| |||| || | |||||||| | |||||| ||  |||| || ||| || |||| |||||||||      
T  3394495 gaggctcatctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaagatatttaaacc 3394396  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| | ||||| || ||||||    
T  3394395 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgct 3394329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 318
Target Start/End: Complemental strand, 1275049 - 1274894
Alignment:
Q  163 aggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatga 262  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||       
T  1275049 aggctcttcttcatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccg 1274950  T
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| ||||||||||||||||||| |||||||||  |  |||||||| |||||||    
T  1274949 tgtaacttggggtatgatatgatctccaactttcatctccaaggtagacctacttc 1274894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 16348000 - 16348065
Alignment:
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    ||||| ||||||||||||||||||| |||||||||| |  |||||||| ||||||| || ||||||    
T  16348000 tgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttttgct 16348065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 28977461 - 28977510
Alignment:
Q  269 ttggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||||||||||||||||| |||||||||| | ||||||||| |||||||    
T  28977461 ttggggtatgatatgatctccaactttcacctctaaggtagacctacttc 28977510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 12492884 - 12493040
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  12492884 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaacc 12492983  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| ||||||| || |  |||||||| |||||||    
T  12492984 gtgtaacttggggtatgatatgatctccaacttttacctccaaggtagagctacttc 12493040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 8228523 - 8228420
Alignment:
Q  213 gcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaac 312  Q
    |||||| | ||||||| |||||||| | | || |||| | || ||||| |||||| ||| ||||||||||||| |  ||||||||| ||| |||||||||    
T  8228523 gcttttatctctctgttgttttatattgtggaaccaagaaatctaaattatgtaatttgtggtatgatatgatttcgaactttcacctatgaggtagaac 8228424  T
Q  313 tact 316  Q
    ||||    
T  8228423 tact 8228420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 318
Target Start/End: Complemental strand, 10639081 - 10638926
Alignment:
Q  163 aggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatga 262  Q
    ||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||       
T  10639081 aggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccg 10638982  T
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| ||||||||||||||||| | |||||||||| |  |||||||| |||||||    
T  10638981 tgtaacttggggtatgatatgatttccaactttcacctccaaggtagacctacttc 10638926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 25937773 - 25937690
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttca-cttataaggtagaactacttcgccctttgct 328  Q
    |||| |||||||| |  ||||| |||||| |||||||||||| ||||||||| ||| |||||||||| |||||| || ||||||    
T  25937773 ccaagatatttaatttgtgtaatttggggaatgatatgatctccaactttcaccttttaaggtagaaatacttctccttttgct 25937690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 3301550 - 3301468
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| | ||||| || ||||||    
T  3301550 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgct 3301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 328
Target Start/End: Original strand, 32066768 - 32066931
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||||||||| |||||||| ||| |||| || | || ||||||| |||||||||  |||| || |||  | ||||||||||||||      
T  32066768 gaggctcttctccattttaaccatccaacttgaatacgatgatttacatttgcttttatttctctgtcattttgtactatgaacccaaaatatttaaact 32066867  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
     ||||| ||   |||||||||||||| ||| |||||| | ||||||||||||||||| || ||||||    
T  32066868 gtgtaactt---gtatgatatgatctccaattttcacctctaaggtagaactacttcaccttttgct 32066931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 51441261 - 51441417
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||||||||| | | |||||||| | |||||| ||  |||| ||  | ||| |||| |||||||||      
T  51441261 gaggctcttctccatttcaaccacccagcttgaatatgatggcttagatctgcttctatttctccgtcattttgtatgaaagacccaagatatttaaact 51441360  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  51441361 gtgtaacttggggtatgatatgatctccaactttcaccttcaaggtagacctacttc 51441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 318
Target Start/End: Complemental strand, 1210529 - 1210374
Alignment:
Q  163 aggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatga 262  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| | | |||||||||| ||||||  |  |||| ||  | ||| |||| |||||||||       
T  1210529 aggctcttcttcatttcaaccacccagcttgaatacgatggcttacatctgcttttatttctccatcattttgtacgaaagacccaagatatttaaactg 1210430  T
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  1210429 tgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 1210374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 43240878 - 43241034
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||||||||| | | ||||||||   |||||| ||  |||| ||  |  ||||||| |||||||||      
T  43240878 gaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttccatttctccgtcattttgtacgaaggatccaagatatttaaacc 43240977  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  43240978 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagatctacttc 43241034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 12807652 - 12807737
Alignment:
Q  230 gttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactac 315  Q
    |||||||| ||| ||||||| ||||||||||  ||||| |||  |||||||| |||| ||||||||||| | ||||||||||||||    
T  12807652 gttttatactatggatccaagatatttaaattgtgtaacttgtagtatgatacgatcctcaactttcacctctaaggtagaactac 12807737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 328
Target Start/End: Original strand, 32083242 - 32083408
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| |||| || | || ||| | | |||||| ||  |||| || ||| || |||| ||||||||||     
T  32083242 gaggctcttctccatttcaaccacccagcttgaatacgatgatttacatttgcctctatttctccgtcattttgtactatggacccaagatatttaaatt 32083341  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
     || || ||||||||||||||||||| |||||||||| |  |||||||| | ||||| || ||||||    
T  32083342 gtgcaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgct 32083408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 51601759 - 51601687
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  51601759 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 51601687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 49347992 - 49348047
Alignment:
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  49347992 tgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 49348047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 51234444 - 51234345
Alignment:
Q  117 tttcacttcagcttgagcggtgccttcctatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgctt 216  Q
    |||| ||||| |||||||||||| ||| |||||||||||| |   |||||| ||||  |||| |||||||||||||| || ||||| || | ||||||||    
T  51234444 tttcccttcaacttgagcggtgctttcgtatcacataaaagacctgaggctattctccatttcaaccacccaacttgaatttgatgatttacatctgctt 51234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 52641060 - 52641107
Alignment:
Q  274 gtatgatatgatcttcaactttcacttataaggtagaactacttcgcc 321  Q
    |||||||||||||| |||||||||| | |||||| |||||||||||||    
T  52641060 gtatgatatgatctccaactttcacctctaaggtcgaactacttcgcc 52641107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 8391713 - 8391635
Alignment:
Q  3 caacacaacatcttcatctctactacgattactttattctcgtttagtttcttaaccaccctacactttgtaccatata 81  Q
    ||||||||||||||||||||  ||||  |||||||| |||||| | |  |||||||| ||| ||||| |||||||||||    
T  8391713 caacacaacatcttcatctccgctacacttactttactctcgtgttgactcttaaccgcccaacactctgtaccatata 8391635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 298
Target Start/End: Original strand, 34827582 - 34827735
Alignment:
Q  145 tatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatataga 244  Q
    |||||||||||||| | |||||||||||  |||| |||||  ||||||| |||  ||| || | || ||||| | |||||| ||  |||| || ||| ||    
T  34827582 tatcacataaaacacatgaggctcttctccatttcaaccattcaacttgaatacaatgatttacatatgcttctatttctccgtcattttgtactatgga 34827681  T
Q  245 tccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcac 298  Q
     |||| |||||||||   ||||| || |||||||||||||||| | ||||||||    
T  34827682 cccaagatatttaaaccttgtaacttagggtatgatatgatctcccactttcac 34827735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1661369 - 1661325
Alignment:
Q  1 ttcaacacaacatcttcatctctactacgattactttattctcgt 45  Q
    ||||||||||||||||||||||| ||| | ||| |||||||||||    
T  1661369 ttcaacacaacatcttcatctctgctatgcttattttattctcgt 1661325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 8671621 - 8671549
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| || |||||||||||||||| |||||||||| |  |||||||| |||||||    
T  8671621 ccaagatatttaaaccgtgtaacttagggtatgatatgatctccaactttcacctccaaggtagacctacttc 8671549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 313
Target Start/End: Complemental strand, 13984836 - 13984669
Alignment:
Q  145 tatcacataaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatataga 244  Q
    ||||||||||||||   |||||||||||| |||| ||||| |||||||  ||| |||| || | |||||||||| ||||| |||  |||| || ||| ||    
T  13984836 tatcacataaaacacttgaggctcttcttcatttcaaccatccaacttaaatacgatgatttacatctgcttttatttctttgtcatttt-tactatgga 13984738  T
Q  245 tccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaact 313  Q
     |||| |||||||||   ||||  |||||||||||||||||||||  ||||||| |  |||||||||||    
T  13984737 cccaagatatttaaaccgtgtatcttggggtatgatatgatcttcttctttcaccttcaaggtagaact 13984669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 36565738 - 36565894
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  36565738 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaacc 36565837  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  36565838 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 36565894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 12492330 - 12492494
Alignment:
Q  153 aaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaat 252  Q
    |||||| | |||||||||||  |||| ||||||||||| || ||| ||| | | | |||||||| | |||||| ||  |||| ||  |  || |||| ||    
T  12492330 aaaacacatgaggctcttctccatttcaaccacccaacctgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 12492429  T
Q  253 atttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactactt 317  Q
    |||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| ||||||    
T  12492430 atttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctactt 12492494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 36544836 - 36544781
Alignment:
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  36544836 tgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 36544781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 30113612 - 30113650
Alignment:
Q  81 atacaacatcgtcaatctgatagttgttcgatagaattt 119  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  30113612 atacaacatcgtcaatttgatagttgttcgatataattt 30113650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 31005008 - 31004853
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| |||||||||||||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| ||||||||| |    
T  31005008 gaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggagccaagatatttaaacg 31004909  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  31004908 -tgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 31004853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 46356348 - 46356504
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| |||||||||||||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  46356348 gaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagatatttaaacc 46356447  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  46356448 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 46356504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 33350303 - 33350459
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  | ||| || | |||||||||      
T  33350303 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagaccctagatatttaaacc 33350402  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
     ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  33350403 gtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 33350459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 36869786 - 36869922
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||||| |||||  ||  |||| || ||| ||||||| |||||||||      
T  36869786 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttttatttcttcgtcattttgtactatggatccaagatatttaaacc 36869885  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcac 298  Q
      |||| ||||||||||||||| ||| ||||||||||    
T  36869886 gcgtaatttggggtatgatatgctctccaactttcac 36869922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 38606789 - 38606654
Alignment:
Q  163 aggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatga 262  Q
    ||||||||||  |||| ||||||||| |||| ||| ||||||| | |||||||| | |||||  ||  |||| || ||| || |||| |||||||||       
T  38606789 aggctcttctccatttcaaccacccagcttgaatacgatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagatatttaaaccg 38606690  T
Q  263 tgtaaattggggtatgatatgatcttcaactttcac 298  Q
    ||||| ||||| ||||||||||||| ||||||||||    
T  38606689 tgtaacttgggatatgatatgatctccaactttcac 38606654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 11593638 - 11593589
Alignment:
Q  269 ttggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||||||||||||||||||||||||||||| |  |||||||| |||||||    
T  11593638 ttggggtatgatatgatcttcaactttcacctccaaggtagacctacttc 11593589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 32630323 - 32630226
Alignment:
Q  231 ttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    |||| |||||| || |||| |||||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| | ||||| || ||||||    
T  32630323 ttttgtaatatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgct 32630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 318
Target Start/End: Complemental strand, 36651779 - 36651623
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||| ||| ||||| | | |||||||| | |||||| ||  |||| ||  |  || |||| |||||||||      
T  36651779 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaacc 36651680  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
      |||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  36651679 gcgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 36651623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 37616617 - 37616545
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| ||||||||||  ||||| ||||||||||||||||||| || ||||||| |  |||||||| |||||||    
T  37616617 ccaagatatttaaatcgtgtaacttggggtatgatatgatctccacctttcacctccaaggtagacctacttc 37616545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7189572 - 7189650
Alignment:
Q  1 ttcaacacaacatcttcatctctactacgattactttattctcgtttagtttcttaaccaccctacactttgtaccata 79  Q
    |||||||||||||| ||||||| |||| | |||||| ||| | || | | ||||||||||||| ||||| |||||||||    
T  7189572 ttcaacacaacatcctcatctccactatgcttacttgatttttgtgttggttcttaaccacccaacactctgtaccata 7189650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 24177714 - 24177848
Alignment:
Q  184 acccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatgatgtaaattggggtatgatatg 283  Q
    |||||||||| |||||||| || | |||||||| | |||||| ||  |||| || ||| || ||   |||||||||   |||||||||||||||||||||    
T  24177714 acccaacttgaatatgatgatttacatctgcttctatttctccgtcattttgtactattgacccgtgatatttaaaccgtgtaaattggggtatgatatg 24177813  T
Q  284 atcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||| ||||  || ||| |||| |||||||    
T  24177814 atctccaaccttcatctacaagctagacctacttc 24177848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 328
Target Start/End: Complemental strand, 48919173 - 48919007
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||| ||||| |||| ||| |||| |||| || ||||| | |||||| ||  |||| || ||| |||||||||||||||||      
T  48919173 gaggctcttctccatttcaactacccagcttgaatacgatgattcacatatgcttctatttctccgtcattttgtactatggatccaaaatatttaaacc 48919074  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
     ||||| ||||||| | ||||||||| | ||||| || |  || ||||| ||||||| || ||||||    
T  48919073 gtgtaacttggggtgtaatatgatctcctacttttaccttcaatgtagacctacttctccatttgct 48919007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 49028968 - 49028896
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||| |||||||||   ||||| |||||||||||| |||||| |||||||||| |  |||||||| |||||||    
T  49028968 ccaagatatttaaaccgtgtaacttggggtatgatctgatctccaactttcacctccaaggtagacctacttc 49028896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 3632720 - 3632644
Alignment:
Q  243 gatccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcg 319  Q
    ||||||| ||||||||||  ||||| || |||||||||||||||| |||||||||| |  |||||||||||||||||    
T  3632720 gatccaagatatttaaatcgtgtaatttagggtatgatatgatctccaactttcacctcaaaggtagaactacttcg 3632644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 328
Target Start/End: Original strand, 5258638 - 5258813
Alignment:
Q  153 aaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaat 252  Q
    |||||| | |||||||||||  |||| ||||||||| |||| ||| |||| |  | ||| |||| | |||||| ||  |||| || ||| || |||| ||    
T  5258638 aaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatgtacatcagcttctatttctccgtcattttgtactatggacccaagat 5258737  T
Q  253 atttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    |||||||   ||||| ||||||||||||||||||| ||||||||||||  |||||||| | ||||| || ||||||    
T  5258738 atttaaactgtgtaacttggggtatgatatgatctccaactttcacttccaaggtagacccacttctccttttgct 5258813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 328
Target Start/End: Complemental strand, 5631685 - 5631436
Alignment:
Q  81 atacaacatcgtcaatctgatagttgttcgatagaatttcactt-cagcttgagcggtgccttcctatcacataaaacataagaggctcttctttatttt 179  Q
    ||||||||| |||  |||||  ||||| |||||||||||  ||| |||||| || ||| | ||| |||| || ||||||   ||| |||||||  ||||     
T  5631685 atacaacattgtcggtctgactgttgtccgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacccgagactcttctccatttc 5631586  T
Q  180 aaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaa-tatttaaatgatgtaaattggggtatg 278  Q
    ||||||||| |||| ||| |||| || | |||||||| | |||||| ||  |||| || ||| || |||||| ||||||||   ||||| ||||||||||    
T  5631585 aaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaaaaatatttaaaccgtgtaacttggggtatg 5631486  T
Q  279 atatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    |||||||||  ||||||||| |  |||||||| | ||||| || ||||||    
T  5631485 atatgatctctaactttcacctgcaaggtagacccacttctccttttgct 5631436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 318
Target Start/End: Original strand, 10100345 - 10100510
Alignment:
Q  153 aaaacataagaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaat 252  Q
    |||||| | |||||||||||  |||  ||||||||| |||| ||| |||| || | ||| |||| | |||||| |   |||| || ||| || |||| ||    
T  10100345 aaaacacatgaggctcttctccattccaaccacccagcttgaatacgatgatttatatcagcttctatttctccgacattttgtactatggacccaagat 10100444  T
Q  253 atttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    |||||||   ||||| ||||||||||||||||||| |||||||||| |  |||||||| |||||||    
T  10100445 atttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttc 10100510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 20428133 - 20428269
Alignment:
Q  162 gaggctcttctttattttaaccacccaacttggatatgatggttcaaatctgcttttgtttctctgtagttttataatatagatccaaaatatttaaatg 261  Q
    |||||||||||  |||| ||||||||| |||||||| |||| || | |||||||| | ||| || || ||||| || | | || |||| |||||||||      
T  20428133 gaggctcttctccatttcaaccacccagcttggatacgatgatttacatctgcttctatttttccgtcgttttgtactgtggacccaatatatttaaacc 20428232  T
Q  262 atgtaaattggggtatgatatgatcttcaactttcac 298  Q
      |||| ||| ||||||||||||||| ||||||||||    
T  20428233 gcgtaacttgtggtatgatatgatctccaactttcac 20428269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 33495882 - 33495836
Alignment:
Q  272 gggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||||||||||||||||||||||||| |  |||||||| |||||||    
T  33495882 gggtatgatatgatcttcaactttcacctccaaggtagacctacttc 33495836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 31152 - 31097
Alignment:
Q  263 tgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttc 318  Q
    ||||| ||||||||||||||||||| ||||||||||||  |||||||| |||||||    
T  31152 tgtaacttggggtatgatatgatctccaactttcacttccaaggtagacctacttc 31097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 12179 - 12261
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcacttataaggtagaactacttcgccctttgct 328  Q
    |||| |||||||||  |||||| ||||||||||||||||||| ||||||||||    |||||||| ||||||| || ||||||    
T  12179 ccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcaccgcgaaggtagacctacttctccttttgct 12261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 2851 - 2903
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcac 298  Q
    |||| |||||||||   ||||| ||||||||||||||||||| ||||||||||    
T  2851 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcac 2903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 5893 - 5841
Alignment:
Q  246 ccaaaatatttaaatgatgtaaattggggtatgatatgatcttcaactttcac 298  Q
    |||| |||||||||   ||||| ||||||||||||||||||| ||||||||||    
T  5893 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcac 5841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University