View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11545_low_5 (Length: 266)
Name: NF11545_low_5
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11545_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 41987726 - 41987482
Alignment:
| Q |
6 |
attcaattggttgagattataaacattatcagcaacagaggacaacatcactgtatgagaaaggaatattttttgtattgattaacaaaagaagttatat |
105 |
Q |
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| T |
41987726 |
attcaatttgttgagattataaacattatcagcaacagaggacaacatcactgtatgagaaaggaatattttttgtattgattaacaaaagaagttatat |
41987627 |
T |
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| Q |
106 |
atctagattctagtgaacagtggctagttatgagaaatgttgaacctgggccatagccagaggactgaggaaagtgcggttgcaacttgcaattgacaca |
205 |
Q |
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| T |
41987626 |
atctagattctagtgaaccgtggctagttatgagaaatgttgaacctgggccatagccataggactgaggaaagtgcagttgcaacttgcaattgacaca |
41987527 |
T |
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| Q |
206 |
gcttatgcagatggagtttgtacgctcatgatatacagctctggt |
250 |
Q |
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| T |
41987526 |
gcttatgcagatggagtttgtacgctcatgatatacaactctggt |
41987482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 41985086 - 41985019
Alignment:
| Q |
19 |
agattataaacattatcagcaacagaggacaacatcactgtatgagaaaggaatattttttgtattga |
86 |
Q |
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| T |
41985086 |
agattataaatattatcagcaacagaagacaacatcactgtatgacaaaggaatattttttgtattga |
41985019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 41985002 - 41984934
Alignment:
| Q |
171 |
tgaggaaagtgcggttgcaacttgcaattgacacagcttatgcagatggagtttgtacgctcatgatat |
239 |
Q |
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| T |
41985002 |
tgaggaaagtacagttacaacttgcaattgacacaacatatgcagatggaatttctatgctcatcatat |
41984934 |
T |
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