View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11545_low_6 (Length: 235)
Name: NF11545_low_6
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11545_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 12165352 - 12165549
Alignment:
| Q |
17 |
cataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatggtctctgttgaactgctccaccat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12165352 |
cataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatggtctctgttgaactgctccaccat |
12165451 |
T |
|
| Q |
117 |
tgatctgagtcctccattgtaagttccaaccatctgatttactgaatccacacaccttcctggtggggcaaatccattagctctttgattaggaatgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12165452 |
tgatctgagtcctccattgtaagttccaaccatctgatttactgaatccacacaccttcctggtggggcaaatccattagctctttgattaggaatgc |
12165549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University