View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11545_low_7 (Length: 227)
Name: NF11545_low_7
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11545_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 48532371 - 48532566
Alignment:
| Q |
18 |
cataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggnnnnnnntggcaaggtatggtttgttggaccagtttcactttgcaac |
117 |
Q |
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| T |
48532371 |
cataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggaaaaaaatggcaaggtatggtttgttggaccagtttcactttgcaac |
48532470 |
T |
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| Q |
118 |
aaagatggtttggataaggcacaaagaggtaatatagcctcaataagtgaacatcattgcttaaagtggctagatttgcaccaaccaaagtctgtg |
213 |
Q |
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| T |
48532471 |
aaagatggtttggataaggcacaaagaggtattatagcctcaataagtgaacatcattgcttaaagtggctagatttgcaccaaccaaagtctgtg |
48532566 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 41511017 - 41511211
Alignment:
| Q |
18 |
cataaacacttttgaggagttggagaaagcatatgttaaggattacaagaaggnnnnnnntggcaaggtatggtttgttggaccagtttcactttgcaac |
117 |
Q |
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|||||||| |||||||||||| ||||||| ||||||||| |||||||| |||| || ||||| |||| |||||| || ||| ||||||||||| |
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| T |
41511017 |
cataaacagttttgaggagttagagaaagaatatgttaatgattacaaaaaggtaagaaatgataaggtttggtgtgttggtcctgttgcactttgcaac |
41511116 |
T |
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| Q |
118 |
aaagatggtttggataaggcacaaagaggtaatatagcctcaataagtgaacatcattgcttaaagtggctagatttgcaccaaccaaagtctgt |
212 |
Q |
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||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |||| ||||| | ||||||||||| ||||||| ||||| |
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| T |
41511117 |
aaagatggtttagataaggctcaaagaggtaacatagcttcaataagtgaacataattgtttaaactttctagatttgcataaaccaaaatctgt |
41511211 |
T |
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