View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11545_low_9 (Length: 219)
Name: NF11545_low_9
Description: NF11545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11545_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 36039145 - 36039330
Alignment:
| Q |
13 |
gagatgaagatgttgtgttgaatgtgtgacaagtttagatgaggtacagttataaatgacaacattagagaaagagagagttgacgtaacacatataata |
112 |
Q |
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| T |
36039145 |
gagatgaagatgttgtgttggatgtgtggcaagtttagatgagttaaaattataaatgacaacattagagaaagag----ttgacgtaacacatataata |
36039240 |
T |
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| Q |
113 |
taaaagatgatgaaaaatagatggtttgagcacgtagagaaaagacctttagattctatattaagaagagaagatttgaataggcatatt |
202 |
Q |
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| T |
36039241 |
gaaaaggtgatgaaaaatagatggtttgagcacgtagagaaaagacctttagattctatattaagaagagaagatttgaataggcatatt |
36039330 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 45841333 - 45841239
Alignment:
| Q |
20 |
agatgttgtgttgaatgtgtgacaagtttagatgaggtacagttataaatgacaacattagagaaagagagagttgacgtaacacatataatataaaaga |
119 |
Q |
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| T |
45841333 |
agatgttgtgttgaatgtgtggtaagcttagaagagatacggttagaaatgacaacattag----atagagagttga-gtaacacctataatagaaaaga |
45841239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 14667690 - 14667801
Alignment:
| Q |
24 |
gttgtgttgaatgtgtgacaagtttagatgaggtacagttataaatgacaacattagagaaagag--agagttgacgtaacacatataatataaaagatg |
121 |
Q |
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| T |
14667690 |
gttgtgttggatgtgtgataagactagatgaggtagaattagaaatgacaatattagagagagagagagagttggggtagcacctatagtagaaaagatg |
14667789 |
T |
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| Q |
122 |
atgaaaaataga |
133 |
Q |
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| T |
14667790 |
gtggaaaataga |
14667801 |
T |
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Back To:
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 16252860 - 16252927
Alignment:
| Q |
16 |
atgaagatgttgtgttgaatgtgtgacaagtttagatgaggtacagttataaatgacaacattagaga |
83 |
Q |
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| T |
16252860 |
atgaggatgttgtgttggatgtgtggtaagattagatgagataaaattagaaatgacaacattagaga |
16252927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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