View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_high_12 (Length: 357)
Name: NF11546_high_12
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 6179691 - 6180020
Alignment:
| Q |
12 |
aaagggacaattttgagttggaaccttcctctgttccaaaacatagtattgaatcatatagaagagaggtagagtgcagagtcgtttcatctcaaggcat |
111 |
Q |
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| T |
6179691 |
aaaggggcaattttgagttggaaccttcctctattccaaaacatagtattgaatcatatagaagagagatggagtgcagagtcatttcatcttaaggcat |
6179790 |
T |
|
| Q |
112 |
cgttagggggatgttggttcctcggcctccgacacatgaatgattgccatgtataccacctatgctttattcgtttttgtccagagaaaggggttcctac |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179791 |
cgttagggagatgttggttcctcggcctccgacacatggatgtttgccatgtataccacctatgctttattcgtttttgtccagagaaaggggttcctac |
6179890 |
T |
|
| Q |
212 |
acccacacctcatagggcatggatgtttcagggtcttcacttgaccattcagcttgaggagtttccccttaggtaaaagtaaagggttagttattctttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179891 |
acccacacctcatagggcatggatgtttcagggtcttcacttgaccattcagcttgaggagtttccccttaggtaaaagtaaagggttagttattctttc |
6179990 |
T |
|
| Q |
312 |
agtagggaggatggtttttagactgataag |
341 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6179991 |
agtagggaggatggtttttagactgataag |
6180020 |
T |
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