View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_high_15 (Length: 301)
Name: NF11546_high_15
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 26832316 - 26832583
Alignment:
| Q |
11 |
caaaggaagaaaataacactagacttctttggagatcataaaaagaagcatacgtggctaaataagaaagccattcaagtactaagtgggacttacttca |
110 |
Q |
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| T |
26832316 |
caaaggaagaaaataacactagacttctttgaagatcataaaa-gaagcatacgtggctaaataagaaagccattcaagtactaagtgggacttacttca |
26832414 |
T |
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| Q |
111 |
gccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagattgattttattgttttgtagctctttatggcacaagttagcatgacccct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
26832415 |
gccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagtttgattttattgttttgcggctctttagggcacaagttagcatga-ccct |
26832513 |
T |
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| Q |
211 |
aaaagataaacaaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagcg |
280 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832514 |
aaaagataaataaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagcg |
26832583 |
T |
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