View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_high_18 (Length: 267)
Name: NF11546_high_18
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 50731776 - 50732025
Alignment:
| Q |
1 |
ctgcatgcatatattaacgctctatcatttataatctattgatttgtgacattaatatatttacctttttaagtgattcagggccatttttggtttctgt |
100 |
Q |
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| T |
50731776 |
ctgcatgcatatattaaccctctatcatttataatctattgatttgtgacattaatatatttacctttttaagtgattcagggccatttttggtttctgt |
50731875 |
T |
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| Q |
101 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaagagttggtccatggcctgaaagcactcatta |
200 |
Q |
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| T |
50731876 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaagagttggtccatggcctgaaagcactcatta |
50731975 |
T |
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| Q |
201 |
gaccatcgaaattgtttaaaatcacaaacttgttttgctttctcatattg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50731976 |
gaccatcgaaattgtttaaaatcacaaacttgttttgctttctcatattg |
50732025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 50724575 - 50724724
Alignment:
| Q |
101 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaagagttggtccatggcctgaaagcactcatta |
200 |
Q |
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||||||||||||| || |||||| || |||||||||||| |||| ||||||||||| ||||||||||| | || |||| ||||| |||||||||| |
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| T |
50724575 |
ggatgtactatttgaatgacatgatggtgcataaatgttgtatatatcaatttctgagtaatcatggaaaacttcactcatgacctgattgcactcatta |
50724674 |
T |
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| Q |
201 |
gaccatcgaaattgtttaaaatcacaaacttgttttgctttctcatattg |
250 |
Q |
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|||||| || ||||||| |||||||||||||||||||||||||||||||| |
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| T |
50724675 |
gaccattgagattgtttgaaatcacaaacttgttttgctttctcatattg |
50724724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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