View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11546_high_22 (Length: 251)

Name: NF11546_high_22
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11546_high_22
NF11546_high_22
[»] chr4 (3 HSPs)
chr4 (11-251)||(50731439-50731694)
chr4 (164-247)||(50724236-50724319)
chr4 (118-156)||(50724175-50724213)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 50731439 - 50731694
Alignment:
Q  11 cagagatgtcgtaagtattgaatatggaaatactgaaaaacacaggtgaaaattaatattcaatattctatatataggataaaataaaatgatgaattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50731439 cagagatgtcgtaagtattgaatatggaaatactgaaaaacacaggtgaaaattaatattcaatattctatatataggataaaataaaatgatgaattaa 50731538  T
Q  111 ggaatcaatcaaattgtagtgcttacttgcaacccttccattctattttac---------------tgtttgcatgaatagataactgaacatctaccct 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||    
T  50731539 ggaatcaatcaaattgtagtgcttacttgcaacccttccattctattttactgtttcctcttttattgtttgcatgaatagataactgaacatctaccct 50731638  T
Q  196 attaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaacttc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50731639 attaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaacttc 50731694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 50724236 - 50724319
Alignment:
Q  164 tttgcatgaatagataactgaacatctaccctattaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaa 247  Q
    |||||||||| |||| | |||||||||| ||| || |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  50724236 tttgcatgaaaagatgattgaacatctatcctgttgaaaaattcttctgcatatgttgaataacaaggatcatagcccccaaaa 50724319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 50724175 - 50724213
Alignment:
Q  118 atcaaattgtagtgcttacttgcaacccttccattctat 156  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  50724175 atcaaattgtagtgcttacttgcaaaccttccatgctat 50724213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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