View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11546_high_5 (Length: 452)
Name: NF11546_high_5
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Complemental strand, 17779406 - 17778974
Alignment:
| Q |
6 |
agttgtaacctcatcacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtagatttggta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17779406 |
agttgtaacctcatcacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtagatttggaa |
17779307 |
T |
|
| Q |
106 |
ataatatcactattagtgttagatgtttcaagtggagatgatgatgagaatatcaagtttgtattaagatcttcatgtagtaatggactaataatggatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779306 |
ataatatcactattagtgttagatgtttcaagtggagatgatgatgagaatatcaagcttgtattaagatcttcatgtagtaatggactaataatggatt |
17779207 |
T |
|
| Q |
206 |
tataaggggtaacgtctacatcaaaattttggctatcattgttgttagtgtagaagtggttggccaaggatgtgttctttgtcaatgagatgttgcttga |
305 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779206 |
tataaggggtaacatcttcatcaaaattttggctatcattgttgttagtgtagaagtggttggccaaggatgtgttctttgtcaatgagatgttgcttga |
17779107 |
T |
|
| Q |
306 |
acaaaattgggtgatttcttgatttttggttagcatattagaggttcttgtttcagatagggaagaaacccaagagtgagacaaagctctttgagccgta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779106 |
acaaaattgggtgatttcttgatttttggttagcatattagaggttcttgtttcagatagggaagaaacccaagagtgagacaaagctctttgagccgta |
17779007 |
T |
|
| Q |
406 |
gaatttgttttcttgaatattctacagatagcc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17779006 |
gaatttgttttcttgaatattctacagatagcc |
17778974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University