View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11546_high_8 (Length: 407)

Name: NF11546_high_8
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11546_high_8
NF11546_high_8
[»] chr6 (3 HSPs)
chr6 (17-396)||(31262820-31263199)
chr6 (211-295)||(19845504-19845589)
chr6 (215-295)||(15342386-15342467)
[»] scaffold0186 (1 HSPs)
scaffold0186 (215-295)||(27627-27708)
[»] chr8 (4 HSPs)
chr8 (215-295)||(24921069-24921150)
chr8 (215-295)||(1083397-1083478)
chr8 (215-295)||(31390889-31390970)
chr8 (215-295)||(40502704-40502785)
[»] chr3 (3 HSPs)
chr3 (215-295)||(13819041-13819122)
chr3 (215-295)||(4267597-4267678)
chr3 (248-295)||(12211238-12211285)
[»] chr1 (4 HSPs)
chr1 (215-295)||(29496742-29496823)
chr1 (215-295)||(24707721-24707802)
chr1 (215-295)||(19148840-19148921)
chr1 (215-295)||(23675894-23675975)
[»] chr7 (1 HSPs)
chr7 (215-295)||(41549133-41549214)
[»] chr4 (1 HSPs)
chr4 (215-295)||(55042433-55042514)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 31263199 - 31262820
Alignment:
Q  17 ttaactataataaaatatccttcggctctaataacatttcaaatggcttggtgatataatcaaatttcaatgttgtgtgcatttatccaacatccgtcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31263199 ttaactataataaaatatccttcggctctaataacatttcaaatggcttggtgatataatcaaatttcaatgttgtgtgcatttatccaacatccgtcat 31263100  T
Q  117 acaaacaccgttaaaatttatcttaataatcatacctagtgcaaatgaaaatatagagcatcacaagcatactgacatattatactatacgattgttgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31263099 acaaacaccgttaaaatttatcttaataatcatacctagtgcaaatgaaaatatagagcatcacaagcatactgacatattatactatacgattgttcaa 31263000  T
Q  217 caaagttagtaactagcaacatattatgtttcattaatattataggtgcaacatggttctactaaattaaaaatagcatnnnnnnnttttacattacaat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  31262999 caaagttagtaactagcaacatattatgtttcattaatattataggtgcaacatggttctactaaattaaaaatagcataaaaattttttacattacaat 31262900  T
Q  317 tttatcaagccacttcattaatttaaatcttctttctcgtatcaccattcatccacggcaaacgcagaaccccacttcat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31262899 tttatcaagccacttcattaatttaaatcttctttctcgtatcaccattcatccacggcaaacgcagaaccccacttcat 31262820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 19845589 - 19845504
Alignment:
Q  211 gttgaacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19845589 gttgaacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcaacatggtcctattaaataaaaaatagcat 19845504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 15342386 - 15342467
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| |||||||||| || ||| ||||||| ||||||| | |||||||||||    
T  15342386 aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcgacatggtcctactaattaaaaaatagcat 15342467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 27708 - 27627
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  27708 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 27627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 24921069 - 24921150
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  24921069 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 24921150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 1083397 - 1083478
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  1083397 aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 1083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 31390970 - 31390889
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  31390970 aacaatgttaataactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 31390889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 40502704 - 40502785
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| |||||||||| || ||||||||||| ||||||| | |||||||||||    
T  40502704 aacaatgttagtaactaacaacatatggtgtttccattaatattacagatgcaacatggtcctactaattaaaaaatagcat 40502785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 13819041 - 13819122
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  13819041 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 13819122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 4267678 - 4267597
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  4267678 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 4267597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 12211285 - 12211238
Alignment:
Q  248 cattaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    |||||||||||||||||| |||| || ||||||||| |||||||||||    
T  12211285 cattaatattataggtgcgacattgtcctactaaataaaaaatagcat 12211238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 29496823 - 29496742
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||    
T  29496823 aacaatgttagtaactaacaacatatggtgtttccaataatattataggtgcaacatggtcctactaaataaaaagtagcat 29496742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 24707802 - 24707721
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||||| ||||| | ||||||| | |||||||||||    
T  24707802 aacaatgttagtaactaacaacatatggtgtttccattaatattataggtgcgacatgatcctactaattaaaaaatagcat 24707721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 19148840 - 19148921
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  19148840 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 19148921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 23675894 - 23675975
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  23675894 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 23675975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 41549214 - 41549133
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  41549214 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 41549133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 55042514 - 55042433
Alignment:
Q  215 aacaaagttagtaactagcaacatattatgtttc-attaatattataggtgcaacatggttctactaaattaaaaatagcat 295  Q
    ||||| |||| |||||| |||||||   |||||| ||||||||||||||||| |||| || ||||||||| |||||||||||    
T  55042514 aacaatgttaataactaacaacatacggtgtttccattaatattataggtgcgacattgtcctactaaataaaaaatagcat 55042433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University