View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11546_low_1 (Length: 722)
Name: NF11546_low_1
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 657; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 18 - 717
Target Start/End: Complemental strand, 40310846 - 40310146
Alignment:
| Q |
18 |
aattcttgtttgcaatgcgtcgtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatcca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40310846 |
aattcttgtttgcaatgcgtcgtcaaaagaaccttgcatcgattactattacaaggaatgcctaattcctcaagatcaagattttcccaaacatcatcca |
40310747 |
T |
|
| Q |
118 |
agatcacaagaattggatgatctgtgctttctaatgtcaagtataattctctggctcttccaacttcagtgtttttgtcaaatttgagattcaaaaagtc |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40310746 |
agatcacaagaattggacgatctgtgctttctaatgtcaagtataattctctagctcttccaacttcagtgtttttgtcaaatttgagatccaaaaagtc |
40310647 |
T |
|
| Q |
218 |
agctatttcatcttgaatctgttttacatttggattttgagacacagtgataaataaaactgcaacaaaa-ccctcaggtacctggctttctcagccact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40310646 |
agctatttcatcttgaatctgttttacatttggattttgagacacagtgataaataaaactgcagcaaaaaccctcaggtacctggctttctcagccact |
40310547 |
T |
|
| Q |
317 |
gctttaaccaactttgttttaccagagcctcgctttccatacaatccaattttatagaacttacgattttgtagtgcctccaaaagtctatctgaagtct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40310546 |
gctttaaccaactttgttttaccagagcctcgctttccatacaatccaattttatagaacttacgattttctagtgcctccaaaagtctatctgaagtct |
40310447 |
T |
|
| Q |
417 |
cttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttgatattcaatgc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310446 |
cttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttgatattcaatgc |
40310347 |
T |
|
| Q |
517 |
ctttaatttgttaagcattttattgggatatcttgattctggttctggtattattgtcacattctccacctcttgtacaagtttttccacttcttttagc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40310346 |
ctttaatttgttaagcattttattgggatatcttgattctggttctggtattattgtcacattctccacctcttgtacaagtttttccacttcttttagc |
40310247 |
T |
|
| Q |
617 |
cactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttttcttgtacagaatcacgatttgatattagctttttcttctctc |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
40310246 |
cactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttttcttgtactgaatcatgatttgatattagctttttcttttctc |
40310147 |
T |
|
| Q |
717 |
t |
717 |
Q |
| |
|
| |
|
|
| T |
40310146 |
t |
40310146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 39 - 539
Target Start/End: Complemental strand, 40326105 - 40325604
Alignment:
| Q |
39 |
gtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatccaagatcacaagaattggatgat |
138 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||| | ||| |
|
|
| T |
40326105 |
gtcaaaaggaccttgcatcgattactattacaaggaatgcctaccttttctggatcaagattttccgaaacatcatccaagatcacaagaatttggcgat |
40326006 |
T |
|
| Q |
139 |
ctgtgctttctaatgtcaagtataattctctggctcttccaacttcagtgtttttgtcaaatttgagattcaaaaagtcagctatttcatcttgaatctg |
238 |
Q |
| |
|
| | || ||||||||||||||| || ||| | ||||||| ||||||| ||| ||| |||| |||||||| || ||| ||||||||||||||| |
|
|
| T |
40326005 |
ccatatttgctaatgtcaagtatatttttcttgttcttccagcttcagtatttacgtcgaattccagattcaactcgttagcaatttcatcttgaatcct |
40325906 |
T |
|
| Q |
239 |
ttttacatttggattttgagacacagtgataaataaaactgcaacaaaaccctcag-gtacctggctttctcagccactgctttaaccaactttgtttta |
337 |
Q |
| |
|
||||| ||||| ||||| |||||| |||||||||||||| || ||||| || | |||| |||||||||||||||||||||| || || |||||||| |
|
|
| T |
40325905 |
ttttatgtttgggttttgggacacattgataaataaaacttcatcaaaaaacttggagtacttggctttctcagccactgctttcactaatgttgtttta |
40325806 |
T |
|
| Q |
338 |
ccagagcctcgctttccatacaatccaattttatagaacttacgattttgtagtgcctccaaaagtctatctgaagtctcttttataggctcaaaacata |
437 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| | ||| | |||| ||||||| ||||||||||||||||| |||||| ||| | | ||||| | |
|
|
| T |
40325805 |
ccagagccgcgtttcccatacaatccaattttatatgaattatcactttgcagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacaca |
40325706 |
T |
|
| Q |
438 |
caaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttgatattcaatgcctttaatttgttaagcatttt |
537 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| ||| || ||||| ||| || |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
40325705 |
caaaattttcagaagagaagtgttctaaacttggaataggactggaaaatagcttgaattcacatcggatattcaatgcctttaatttgtctagcatttt |
40325606 |
T |
|
| Q |
538 |
at |
539 |
Q |
| |
|
|| |
|
|
| T |
40325605 |
at |
40325604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 300 - 510
Target Start/End: Original strand, 40257624 - 40257834
Alignment:
| Q |
300 |
tggctttctcagccactgctttaaccaactttgttttaccagagcctcgctttccatacaatccaattttatagaacttacgattttgtagtgcctccaa |
399 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||||| | |||| | ||| ||||||||||| |
|
|
| T |
40257624 |
tggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatatagcaattaccgtcttgcagtgcctccaa |
40257723 |
T |
|
| Q |
400 |
aagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactca |
499 |
Q |
| |
|
|||| ||| |||| |||| | | |||||| |||||||||||||| ||||||||| |||||||| ||||| || | ||||||||||||||||| |
|
|
| T |
40257724 |
aagttgatccgaagctactttagtggactcaaagcatacaaaatttccgaaagagaagtactctaaaccaggaatagggctagaaaatggctcaaactca |
40257823 |
T |
|
| Q |
500 |
catttgatatt |
510 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
40257824 |
caattggtatt |
40257834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 40333667 - 40333567
Alignment:
| Q |
39 |
gtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatccaagatcacaagaattggatgat |
138 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||| ||| || |||| ||| ||| ||||||||| ||||||||||| |||||| ||| |
|
|
| T |
40333667 |
gtcaaaagaaccttgcatagattactattacaaggaattcctacatcccgtaggtcaaattttgcccgaacatcatcaaagatcacaagtattggacgat |
40333568 |
T |
|
| Q |
139 |
c |
139 |
Q |
| |
|
| |
|
|
| T |
40333567 |
c |
40333567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 40598033 - 40598128
Alignment:
| Q |
39 |
gtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatccaagatcacaagaattgga |
134 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| || || |||||| ||| ||| ||||||||| || ||||| ||||||||| |
|
|
| T |
40598033 |
gtcaaaaggatcttgcatcgattactattacaaggaatgcctacatcttctggatcaaattttacccgaacatcatcgaaaatcactagaattgga |
40598128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 40598384 - 40598508
Alignment:
| Q |
389 |
agtgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatg |
488 |
Q |
| |
|
|||||||| |||| | ||||||||||| | | ||| || |||||| | || |||||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
40598384 |
agtgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatg |
40598483 |
T |
|
| Q |
489 |
gctcaaactcacatttgatattcaa |
513 |
Q |
| |
|
| ||||| || ||||| | |||||| |
|
|
| T |
40598484 |
gatcaaattcgcattttacattcaa |
40598508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 433
Target Start/End: Complemental strand, 40303278 - 40303160
Alignment:
| Q |
315 |
ctgctttaaccaactttgttttaccagagcctcgctttccatacaatccaattttatagaacttacgattttgtagtgcctccaaaagtctatctgaagt |
414 |
Q |
| |
|
||||||| ||||| |||||||||||| | || | ||| |||||||||||||| || | | ||| || ||||||||| | | |||||||||||||| |
|
|
| T |
40303278 |
ctgctttcaccaaatttgttttaccaaaacccctcttcccatacaatccaatcataaaacaattattatcatgtagtgccgctagaagtctatctgaagc |
40303179 |
T |
|
| Q |
415 |
ctcttttataggctcaaaa |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40303178 |
ctcttttataggctcaaaa |
40303160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 504
Target Start/End: Complemental strand, 40277202 - 40277089
Alignment:
| Q |
391 |
tgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggc |
490 |
Q |
| |
|
|||||| |||||| |||||||||||| | | ||| || |||||| | || ||||||| ||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
40277202 |
tgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttccattagaaaagtgctctaaacttggaattcgagttgaaaatggg |
40277103 |
T |
|
| Q |
491 |
tcaaactcacattt |
504 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
40277102 |
tcaaattcacattt |
40277089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 232
Target Start/End: Complemental strand, 40376700 - 40376507
Alignment:
| Q |
39 |
gtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatccaagatcacaagaattggatgat |
138 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |||| ||| || |||| || ||| ||||||||| ||||||||||| || ||||||| |
|
|
| T |
40376700 |
gtcaaaagaaccttgcatagattactagtacaaggaattcctacatcccgtaggtcaaatcttgcccgaacatcatcaaagatcacaagtataggatgat |
40376601 |
T |
|
| Q |
139 |
ctgtgctttctaatgtcaagtataattctctggctcttccaacttcagtgtttttgtcaaatttgagattcaaaaagtcagctatttcatcttg |
232 |
Q |
| |
|
| | |||||| ||| | ||| || ||| |||||| || ||||| ||||| | |||||| | | |||||| ||||||| ||||||||||| |
|
|
| T |
40376600 |
ccatattttctattgtggataatatttttcttgctctttcagcttcactgtttctatcaaatcttatattcaaggagtcagcaatttcatcttg |
40376507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 40386945 - 40386845
Alignment:
| Q |
39 |
gtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatccaagatcacaagaattggatgat |
138 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| |||| ||| || |||| ||| ||| ||||||||| ||||| ||||| |||||| ||| |
|
|
| T |
40386945 |
gtcaaaagtaccttgcatcgattactattagaaggaattcctacatcccgtaggtcaaattttgcccgaacatcatcaaagataacaagtattggacgat |
40386846 |
T |
|
| Q |
139 |
c |
139 |
Q |
| |
|
| |
|
|
| T |
40386845 |
c |
40386845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 40257365 - 40257456
Alignment:
| Q |
39 |
gtcaaaagaaccttgcatcgattactattacaaggaatgcctaactcctcaagatcaagattttcccaaacatcatccaagatcacaagaat |
130 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||||||||||| |||| ||||| || ||||| ||| |||||||||| ||||||||| ||||| |
|
|
| T |
40257365 |
gtcagaagcaccttgcatctattaccattacaaggaatacctatatcctctagctcaagctttgaacaaacatcattcaagatcacgagaat |
40257456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 673
Target Start/End: Original strand, 40598605 - 40598671
Alignment:
| Q |
607 |
ttcttttagccactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttt |
673 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||| |||||| ||||| |||||||||| |||| |
|
|
| T |
40598605 |
ttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaactttt |
40598671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 26118783 - 26118818
Alignment:
| Q |
96 |
agattttcccaaacatcatccaagatcacaagaatt |
131 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26118783 |
agattttcccacacatcatccaagatcacaagaatt |
26118818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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