View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_10 (Length: 380)
Name: NF11546_low_10
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 36073407 - 36073212
Alignment:
| Q |
10 |
agatgaagtttaaagaatcaaagatcagttaagctctgagtttgatatgactaaattatgaaagttgagatatttccttggtttagaattcaccaatacc |
109 |
Q |
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| T |
36073407 |
agatgaagtttaaagaatcaaagatcagttaagctctgagtttgatatgactaaattatgaaaattgagatatttccttggtttagaattcaccaatacc |
36073308 |
T |
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| Q |
110 |
aacatagtgtgttaattcaccataaaaaatgtgtcaatgacatactgaaaagattcaatatgttgattgcagttgatcaagcacacctatagaaac |
205 |
Q |
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| T |
36073307 |
aacatagtgtgttaattcaccataaaaaatgtgtcaatgacatactgaaaagattcaatatgttgattgcaattgatcaagcacacctatagaaac |
36073212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 36073168 - 36073000
Alignment:
| Q |
203 |
aacattctttataagcaaatggttggaagtcttagatatgcttgcaattcaagacttgatatacgtcacagtgtagaaatagtgagtaaattcatgcaaa |
302 |
Q |
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| T |
36073168 |
aacattctttataagcaaatggttggaagtcttagatatgcttgcaattcaagacttgatatacgtcacagtgtagaaatggtgagtaaattcatgcaaa |
36073069 |
T |
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| Q |
303 |
aaccaaagttgtcacatatatatgcaagcaataaaaaggatcatgaggtattttaaaggtacaactgat |
371 |
Q |
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| T |
36073068 |
aaccaaagttgtcacatatatatgcaagcaataaaaaggatcatgaggtattttaaaggtacaactgat |
36073000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 353
Target Start/End: Complemental strand, 12696598 - 12696452
Alignment:
| Q |
203 |
aacattctttataagcaaatggttggaagtcttagatatgcttgcaattcaagacttgatatacgtcacagtgtagaaatagtgagtaaattcatgcaaa |
302 |
Q |
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| T |
12696598 |
aacactctttacaaacaaatggttggaagtctcatatatgcttgaaattcaagacctgatatatgtcgcattgtaggagtggtgagaagattcatgcaaa |
12696499 |
T |
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| Q |
303 |
aaccaaagttgtcacatatatatgcaagcaataaaaaggatcatgaggtat |
353 |
Q |
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| T |
12696498 |
aacaaaagctgtcacatatt----caagaagtaaaaaggatcatgaggtat |
12696452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 12448107 - 12447936
Alignment:
| Q |
10 |
agatgaagtttaaagaatcaaagatcagttaagctctgagtt-----tgatatgactaaattatgaaagttgagatatttccttggtttagaattcacca |
104 |
Q |
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| T |
12448107 |
agatgaagttgaaagaaacaaaggtcagttaagctctgaatttgatatgatatgactaatttaggaggattgaaatatttccttggtttagaattcacta |
12448008 |
T |
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| Q |
105 |
ataccaacata-gtgtgttaattcaccataaaaaatgtgtcaatgacatactgaaaagattcaatatgttga |
175 |
Q |
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| T |
12448007 |
acaccagtagaggtgtggtaactcaccaaaagaaatacatcaatgacatatcaaaaagattcaatatgttga |
12447936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 12447850 - 12447793
Alignment:
| Q |
215 |
aagcaaatggttggaagtcttagatatgcttgcaattcaagacttgatatacgtcaca |
272 |
Q |
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| T |
12447850 |
aagcaaatggttggaagtctcagatatccttgcaattcaatacctgatttatgtcaca |
12447793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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