View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_11 (Length: 375)
Name: NF11546_low_11
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 341
Target Start/End: Original strand, 14796658 - 14797012
Alignment:
| Q |
2 |
ttatatataagtgattatgactgaattgaattctgccttatgtatcactgattatgctttgtattttattaattatatgaattggaagaaaagtgtcatt |
101 |
Q |
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|||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14796658 |
ttatgtatcagtgattatgaatgaattgaattatgccttatgtatcactgattatgctttgtattttattagttatatgaattggaagaaaagtgtcatt |
14796757 |
T |
|
| Q |
102 |
gctaattcaacctgtttcaaataaacataacaaacatagt---------------tatagcataataaagcacattatgtgcatatgtctcattacaaat |
186 |
Q |
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| T |
14796758 |
gctaattcaacctgtttcaaataaacataacaaacatagttatagcgtaattagttatagcataataaagcgcattatgtgcatatgtctcattacaaat |
14796857 |
T |
|
| Q |
187 |
taaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaagcatctagttccaaaacatagtgcacaccaagtgcgtatgacagacca |
286 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14796858 |
taaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaaggaaagcatctagttccaaaacatagtgcacaccaagtgcatatgacagacca |
14796957 |
T |
|
| Q |
287 |
aaaaacagttacatagtaggcaagtgcataagtgaccaagtgcataagttagacc |
341 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14796958 |
aaaaacagctacatagtaggcaagtgcataagtgaccaagtgcataagtcagacc |
14797012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 341
Target Start/End: Original strand, 15243650 - 15244004
Alignment:
| Q |
2 |
ttatatataagtgattatgactgaattgaattctgccttatgtatcactgattatgctttgtattttattaattatatgaattggaagaaaagtgtcatt |
101 |
Q |
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| T |
15243650 |
ttatgtatcagtgattatgaatgaattgaattatgccttatgtatcactgattatgctttgtattttattagttatatgaattggaagaaaagtgtcatt |
15243749 |
T |
|
| Q |
102 |
gctaattcaacctgtttcaaataaacataacaaacatagt---------------tatagcataataaagcacattatgtgcatatgtctcattacaaat |
186 |
Q |
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| T |
15243750 |
gctaattcaacctgtttcaaataaacataacaaacatagttatagcgtaattagttatagcataataaagcgcattatgtgcatatgtctcattacaaat |
15243849 |
T |
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| Q |
187 |
taaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaagcatctagttccaaaacatagtgcacaccaagtgcgtatgacagacca |
286 |
Q |
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| T |
15243850 |
taaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaaggaaagcatctagttccaaaacatagtgcacaccaagtgcatatgacagacca |
15243949 |
T |
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| Q |
287 |
aaaaacagttacatagtaggcaagtgcataagtgaccaagtgcataagttagacc |
341 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15243950 |
aaaaacagctacatagtaggcaagtgcataagtgaccaagtgcataagtcagacc |
15244004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 341
Target Start/End: Complemental strand, 14646087 - 14645733
Alignment:
| Q |
2 |
ttatatataagtgattatgactgaattgaattctgccttatgtatcactgattatgctttgtattttattaattatatgaattggaagaaaagtgtcatt |
101 |
Q |
| |
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|||| ||| ||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14646087 |
ttatgtatcagtgattatgaatgaattgaattatgccttatatatcactgattatggtttgtattttattagttatatgaattggaagaaaagtgtcatt |
14645988 |
T |
|
| Q |
102 |
gctaattcaacctgtttcaaataaacataacaaacatagttatagcataa---------------taaagcacattatgtgcatatgtctcattacaaat |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
14645987 |
gctaattcaacctgtttcaaataaacataacaaacatagttatagcataaatagttatagcataataaagcacattatgtgcatatttctcattacaaat |
14645888 |
T |
|
| Q |
187 |
taaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaagcatctagttccaaaacatagtgcacaccaagtgcgtatgacagacca |
286 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14645887 |
taaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaaggaaagcatctagttccaaaacatagtgcacaccaagtgcatatgacagacca |
14645788 |
T |
|
| Q |
287 |
aaaaacagttacatagtaggcaagtgcataagtgaccaagtgcataagttagacc |
341 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14645787 |
aaaaacagttacatagtaggcaagtgcataagtgcccaagtgcataagttagacc |
14645733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 146 - 293
Target Start/End: Complemental strand, 26270067 - 26269920
Alignment:
| Q |
146 |
gcataataaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacataaattaaatggaaagcatcta |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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| T |
26270067 |
gcataataaagcacattatgtgcatatgtctcattacaaattaaagcacatcaagtgcacgtaatgtagcataaaacagaaattaaaatgcaagcatcta |
26269968 |
T |
|
| Q |
246 |
gttccaaaacatagtgcacaccaagtgcgtatgacagaccaaaaaaca |
293 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
26269967 |
gttccaaaacacagtgcacatcaagtgtatatgacagaccaaaaaaca |
26269920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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