View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_12 (Length: 369)
Name: NF11546_low_12
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 6624443 - 6624103
Alignment:
| Q |
19 |
attatgatatattagtgcttagtctaaagttaatgatacattattccttatagacattacttacttttcattttcataaggaacaaatacttcaccatga |
118 |
Q |
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| T |
6624443 |
attatgatatattagtgcttagtctaaagttaatgatacattattccttatagacattacttacttttcattttcataaggaacaaatacttcaccatga |
6624344 |
T |
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| Q |
119 |
atcaagttgtgtttaacctcattttattcacactaagcatgcttcattcatcgaaaacaaaggcacaacagaattactcaggaaattcaatactcagctg |
218 |
Q |
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| T |
6624343 |
atcaagttgtgtttaacctcattttattcacactaagcatgcttcattcatcgaaaacaaaggcacaacagaattactcaggaaattcaatactcagctg |
6624244 |
T |
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| Q |
219 |
caagaacaacgatgatgcgggaccttcatcggcattcctttacacctgcaatggcctcaacaaatcatgcatgacctatctaaccttcaaatccgtacta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6624243 |
caagaacaacgatgatgcgggaccttcatcggcattcctttacacctgcaatggcctcaataaatcatgcatgacctatctaaccttcaaatccgtacta |
6624144 |
T |
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| Q |
319 |
ccttataactccgtttccacaatttccagcctcacttcatc |
359 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
6624143 |
ccttataactccgtttccacaatttccagcctcatttcatc |
6624103 |
T |
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