View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_14 (Length: 313)
Name: NF11546_low_14
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 58 - 298
Target Start/End: Complemental strand, 22247771 - 22247531
Alignment:
| Q |
58 |
cacacacaccgaataccatcattgtaatatttcaatccaacaagtcacgagtatcaaggctaaacaaataactccatcaaggttagttaatgatttcgtt |
157 |
Q |
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| T |
22247771 |
cacacacaccgaataccatcattgtaatatttcaatccaacaagtcacgagtatcaaggctaaacaaataactccattaaggttggttaataatttcgtt |
22247672 |
T |
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| Q |
158 |
ccaaaattcaccttgatggtggcaaattaacattaatttacttgtttatttcaaggcacatactaacttattttgcaagaaaccatttaaaaatccctca |
257 |
Q |
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| T |
22247671 |
ccaaaattcaccttgttggtggcaaattaacattaatttacttgtttatttcaaggcgcatactaacttattttgcaagaaaccatttaaaaatccctca |
22247572 |
T |
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| Q |
258 |
tttcatgtaaatattgtataattaggtcaccattgcattcc |
298 |
Q |
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| T |
22247571 |
tttcatgtaaatattgtataattaggtcaccattgcattcc |
22247531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 22248444 - 22248403
Alignment:
| Q |
18 |
aaacatccctataatacaaccaaagcaagtacaccaagacca |
59 |
Q |
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| T |
22248444 |
aaacatccctataatacgaccaaagcaagtacaccaagacca |
22248403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 29447118 - 29447069
Alignment:
| Q |
221 |
taacttattttgcaagaaaccatttaaaaatccctcatttcatgtaaatat |
271 |
Q |
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| T |
29447118 |
taacttattttgcaagaaaccatatgaaaa-cccccatttcatgtaaatat |
29447069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 5057218 - 5057133
Alignment:
| Q |
187 |
acattaatttacttgtttatttcaaggcacatactaacttattttgcaagaaaccatttaaaaatccctcatttcatgtaaatatt |
272 |
Q |
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| T |
5057218 |
acatttatttacttatatacttcaaggaacttattaacttactttgcaagaaaccttttgaaaaatcctcaatgcatgtaaatatt |
5057133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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