View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11546_low_15 (Length: 311)

Name: NF11546_low_15
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11546_low_15
NF11546_low_15
[»] chr6 (5 HSPs)
chr6 (16-105)||(13064559-13064648)
chr6 (16-105)||(13071313-13071402)
chr6 (209-238)||(13064752-13064781)
chr6 (209-238)||(13071506-13071535)
chr6 (209-238)||(13075710-13075739)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 13064559 - 13064648
Alignment:
Q  16 caaacataactactagagtaacaagtagtgctgaacctgcagctataacaaatggaacaaacaatttctttgagattttatcttcacttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13064559 caaacataactactagagtaacaagtagtgctgaacctgcagctataacaaatggaataaacaatttctttgagattttatcttcacttg 13064648  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 13071313 - 13071402
Alignment:
Q  16 caaacataactactagagtaacaagtagtgctgaacctgcagctataacaaatggaacaaacaatttctttgagattttatcttcacttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13071313 caaacataactactagagtaacaagtagtgctgaacctgcagctataacaaatggaataaacaatttctttgagattttatcttcacttg 13071402  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 13064752 - 13064781
Alignment:
Q  209 gtttatacatttttcaacaatttcttggcc 238  Q
    ||||||||||||||||||||||||||||||    
T  13064752 gtttatacatttttcaacaatttcttggcc 13064781  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 13071506 - 13071535
Alignment:
Q  209 gtttatacatttttcaacaatttcttggcc 238  Q
    ||||||||||||||||||||||||||||||    
T  13071506 gtttatacatttttcaacaatttcttggcc 13071535  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 13075710 - 13075739
Alignment:
Q  209 gtttatacatttttcaacaatttcttggcc 238  Q
    ||||||||||||||||||||||||||||||    
T  13075710 gtttatacatttttcaacaatttcttggcc 13075739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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