View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_17 (Length: 293)
Name: NF11546_low_17
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 28232308 - 28232028
Alignment:
| Q |
1 |
atataatcaaagagcataaaacaagaaacatggatacctcctatctgtttgaaggacatacatatatattgcccaaattcagacattattaaaattagaa |
100 |
Q |
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| T |
28232308 |
atataatcaaagagcataaaacaagaaacatggatacctcctatctgtttgaaggacatacatatatattgcccaaattcagacattattaaaattagaa |
28232209 |
T |
|
| Q |
101 |
tacattaaacataattgttatccactcacttggcagctgattacctatagaatagaagtgaaactaaaactgaaagcaaaagcaatagc----ccatggt |
196 |
Q |
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| T |
28232208 |
tacattaaacacaattgttatccactcacttggcagctgattacctatagaatagaagtgaaactaaaactaaaagcaaaagcaaaagcaaaaacatggt |
28232109 |
T |
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| Q |
197 |
catttaactagaaaactagaaagcatttaattaatgtacattgcacaaacaagttcttttgtgacatccttattgccatat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28232108 |
catttaactagaaaactagaaagcatttaattaatgtacatttcacaaacaagttcttttgtgacatccttattgccatat |
28232028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 28239773 - 28239724
Alignment:
| Q |
228 |
taatgtacattgcacaaacaagttcttttgtgacatccttattgccatat |
277 |
Q |
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| T |
28239773 |
taatctacattgcacaaacaagttcttttgtgccatccttgttgccatat |
28239724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 28327072 - 28327020
Alignment:
| Q |
3 |
ataatcaaagagcataaaacaagaaacatggatacctcctatctgtttgaaggaca |
58 |
Q |
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| T |
28327072 |
ataatcaaagagcataaaacaagaaacatgtgta---cctatctgtttgaaggaca |
28327020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28239948 - 28239904
Alignment:
| Q |
1 |
atataatcaaagagcataaaacaagaaacatggatacctcctatc |
45 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||| |
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| T |
28239948 |
atataatcaaagagcataaaacaagaaacatgagtatctcctatc |
28239904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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