View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11546_low_19 (Length: 267)
Name: NF11546_low_19
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 50731776 - 50732025
Alignment:
| Q |
1 |
ctgcatgcatatattaacgctctatcatttataatctattgatttgtgacattaatatatttacctttttaagtgattcagggccatttttggtttctgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50731776 |
ctgcatgcatatattaaccctctatcatttataatctattgatttgtgacattaatatatttacctttttaagtgattcagggccatttttggtttctgt |
50731875 |
T |
|
| Q |
101 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaagagttggtccatggcctgaaagcactcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50731876 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaagagttggtccatggcctgaaagcactcatta |
50731975 |
T |
|
| Q |
201 |
gaccatcgaaattgtttaaaatcacaaacttgttttgctttctcatattg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50731976 |
gaccatcgaaattgtttaaaatcacaaacttgttttgctttctcatattg |
50732025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 50724575 - 50724724
Alignment:
| Q |
101 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaagagttggtccatggcctgaaagcactcatta |
200 |
Q |
| |
|
||||||||||||| || |||||| || |||||||||||| |||| ||||||||||| ||||||||||| | || |||| ||||| |||||||||| |
|
|
| T |
50724575 |
ggatgtactatttgaatgacatgatggtgcataaatgttgtatatatcaatttctgagtaatcatggaaaacttcactcatgacctgattgcactcatta |
50724674 |
T |
|
| Q |
201 |
gaccatcgaaattgtttaaaatcacaaacttgttttgctttctcatattg |
250 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50724675 |
gaccattgagattgtttgaaatcacaaacttgttttgctttctcatattg |
50724724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University