View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11546_low_2 (Length: 603)

Name: NF11546_low_2
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11546_low_2
NF11546_low_2
[»] chr1 (3 HSPs)
chr1 (1-428)||(26831769-26832197)
chr1 (470-603)||(26832206-26832339)
chr1 (302-354)||(10629409-10629461)
[»] chr6 (1 HSPs)
chr6 (314-351)||(3218632-3218669)
[»] chr8 (1 HSPs)
chr8 (313-361)||(24074542-24074590)
[»] chr5 (1 HSPs)
chr5 (313-361)||(14487597-14487645)
[»] chr4 (1 HSPs)
chr4 (313-361)||(42488745-42488793)
[»] chr3 (1 HSPs)
chr3 (312-356)||(31435511-31435555)


Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 26831769 - 26832197
Alignment:
Q  1 acacatcgttaattaattaattcaacaaccttgcttcgatgcaaattaattgctatatagtttatcttatactgattagaaattattttgcaggatagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26831769 acacatcgttaattaattaattcaacaaccttgcttcgatgcaaattaattgctatatagtttatcttatactgattaggaattattttgcaggatagta 26831868  T
Q  101 caaatattaattaatccgttcattactaatagatacataaacagttactggaaaatagggtccactattaaattaaaattgcacatgcagctgataatgt 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831869 caaatattaattaatcagttcattactaatagatacataaacagttactggaaaatagggtccactattaaattaaaattgcacatgcagctgataatgt 26831968  T
Q  201 attagtaggagattagtctcttcttcaa-gtgtttcctaattaaggtgatgatgnnnnnnnnttaagttagtctatatgcactatatcatcctagtagtt 299  Q
    | |||||||||||||||||||||||||| ||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||    
T  26831969 aatagtaggagattagtctcttcttcaatgtgtttcctaattaatgtgatgatgaaaaaaaattaagttagtctatatgcactatatcatcctagtagtt 26832068  T
Q  300 ggaaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatattgcggacgtttgccgcagaaaccaactcaatgcagcca 399  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26832069 ggaaattcatctaaaagtgaataagtgagaagtccgaggtttgaacctcaacccctggatattgcggacgtttgccgcagaaaccaactcaatgcagcca 26832168  T
Q  400 taaatgaagtctaagcattcataatactc 428  Q
    |||||||||||| ||||| ||||||||||    
T  26832169 taaatgaagtcttagcatccataatactc 26832197  T

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Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 470 - 603
Target Start/End: Original strand, 26832206 - 26832339
Alignment:
Q  470 catgacgatgacttctcatgacagactgtatccaaatcaaatatgcactcttttaagtagcattttccaccttttccatgttactttttatgcacacaaa 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832206 catgacgatgacttctcatgacagactgtatccaaatcaaatatgcactcttttaagtagcattttccaccttttccatgttactttttatgcacacaaa 26832305  T
Q  570 agaaaccaaccaaaggaagaaaataacactagac 603  Q
    ||||||||||||||||||||||||||||||||||    
T  26832306 agaaaccaaccaaaggaagaaaataacactagac 26832339  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 10629461 - 10629409
Alignment:
Q  302 aaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccc 354  Q
    ||||||||| |||||||||||| || || |||||||||||||||| |||||||    
T  10629461 aaattcatctaaaggtgaataaatgggatgtccgaggttcgaaccccaacccc 10629409  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 3218669 - 3218632
Alignment:
Q  314 aggtgaataagtgagaagtccgaggttcgaacctcaac 351  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3218669 aggtgaataagtgagaagttcgaggttcgaacctcaac 3218632  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 24074590 - 24074542
Alignment:
Q  313 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 361  Q
    ||||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  24074590 aaggtgaataagtgaggtgtccgaggttcgaacttcaacccctacatat 24074542  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 14487645 - 14487597
Alignment:
Q  313 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 361  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||| ||||    
T  14487645 aaggtgaataagtgggatatccgaggttcgaaccccaacccctacatat 14487597  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 42488793 - 42488745
Alignment:
Q  313 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 361  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||| ||||    
T  42488793 aaggtgaataagtgaggcgtccgaggtttgaaccccaacccctacatat 42488745  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 31435511 - 31435555
Alignment:
Q  312 aaaggtgaataagtgagaagtccgaggttcgaacctcaaccccta 356  Q
    |||| |||||||||| || |||||||||||||||| |||||||||    
T  31435511 aaagatgaataagtgggatgtccgaggttcgaaccccaaccccta 31435555  T

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