View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11546_low_20 (Length: 256)

Name: NF11546_low_20
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11546_low_20
NF11546_low_20
[»] chr7 (3 HSPs)
chr7 (67-256)||(14796467-14796656)
chr7 (67-256)||(15243459-15243648)
chr7 (67-256)||(14646092-14646281)
[»] chr1 (1 HSPs)
chr1 (67-196)||(26270228-26270369)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 67 - 256
Target Start/End: Original strand, 14796467 - 14796656
Alignment:
Q  67 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtatttta 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14796467 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg 14796566  T
Q  167 attcaattgttggaacaaatttgatgtctatgtgttgtgttgtgttgatgtctatgtaataccccttttctttgtatgatgctttactga 256  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14796567 gttcaattgttggaacaaatttgatgtctatgtgttgtgctgtgttgatgtctatgtaatacgccttttctttgtatgatgctttactga 14796656  T

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Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 67 - 256
Target Start/End: Original strand, 15243459 - 15243648
Alignment:
Q  67 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtatttta 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15243459 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg 15243558  T
Q  167 attcaattgttggaacaaatttgatgtctatgtgttgtgttgtgttgatgtctatgtaataccccttttctttgtatgatgctttactga 256  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15243559 gttcaattgttggaacaaatttgatgtctatgtgttgtgctgtgttgatgtctatgtaatacgccttttctttgtatgatgctttactga 15243648  T

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Target: chr7; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 67 - 256
Target Start/End: Complemental strand, 14646281 - 14646092
Alignment:
Q  67 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtatttta 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14646281 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg 14646182  T
Q  167 attcaattgttggaacaaatttgatgtctatgtgttgtgttgtgttgatgtctatgtaataccccttttctttgtatgatgctttactga 256  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14646181 gttcaattgttggaacaaatttgatgtctatgtgttgtgctgtgttgatgtctatgtaataccccttttagttgtatgatgctttactga 14646092  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 26270369 - 26270228
Alignment:
Q  67 ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttacta-----gtgtt-------gtgttgtgttgttcaaa 154  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||       ||||| ||||||||| |    
T  26270369 ctggttgttcatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttaatatctatatgttggttctagtgttttgttgttcaga 26270270  T
Q  155 ggttgtattttaattcaattgttggaacaaatttgatgtcta 196  Q
     ||||||||||  |||||||||||||||||||||||||||||    
T  26270269 agttgtattttggttcaattgttggaacaaatttgatgtcta 26270228  T

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