View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_3 (Length: 515)
Name: NF11546_low_3
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Complemental strand, 34676867 - 34676387
Alignment:
| Q |
16 |
agtactacatgatgaaaacaacaattcaaaacaagtttgggttgcagcagatagagacacaagttcagaaaaatcactgctcgttttcctgttagttgag |
115 |
Q |
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| T |
34676867 |
agtactacatgatgaaaacaacaattcaaaacaagtttgggttgcagcagatagagacacaagttcagaaaaatcactgctcgttttcctgttagttgag |
34676768 |
T |
|
| Q |
116 |
ttcataaaacacaccatcacnnnnnnnn-gccttacagaatcactacactagtagcactaataacaagttgtttt-attatactaccatatcttttacac |
213 |
Q |
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| T |
34676767 |
ttcataaaacacaccatcacaaaaaaaaagccttacagaatcacta-----gtagcactaataacaagttgtttttattatactaccatatcttttacac |
34676673 |
T |
|
| Q |
214 |
atgaaaagttcttacaaactctatatgagattgagacttgagagtgaccattaatatactttgtagtttcaactccatccaaatccaaatatacatgatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676672 |
atgaaaagttcttacaaactctatatgagattgagacttgagagtgaccattaatatactttgtagtttcaactccatccaaatccaaatatacatgatc |
34676573 |
T |
|
| Q |
314 |
tttgtttctgtgtatttgattgtgacatgttgccaataaaaaactcaactgctcctgaatcctgatcctcactgacctcacttcttctgtcaccagtgcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676572 |
tttgtttctgtgtatttgattgtgacatgttgccaataaaaaactcaactgctcctgaatcctgatcctcactgacctcacttcttctgtcaccagtgcc |
34676473 |
T |
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| Q |
414 |
tttattttagtgaaaattaatcacttcaaatggttactacatgtttaacccactttggtaattaaaataaaataggaaagttaatattcat |
504 |
Q |
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| T |
34676472 |
tttattttagtgaaaattaatcacttcaaatggttactacatgtttaacccactttggtaattaa-----aataggaaagttaatattcat |
34676387 |
T |
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