View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_4 (Length: 454)
Name: NF11546_low_4
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 38851379 - 38851817
Alignment:
| Q |
8 |
gagcagagaatgaaagaaaacaaaaaa-ctaattagtataaattaccctagtatgttttgtacctataataagtttattnnnnnnn----tatagattag |
102 |
Q |
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| T |
38851379 |
gagcaaagaatgaaagaaaacaaaaaaactaaatagtataaattaccctagtatgctttgtacctataataagtttattaaaaaaaaaaatatagattag |
38851478 |
T |
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| Q |
103 |
tcagcctat---gctaatagtataaactagtaaacatgcatgtcctatgtcttcatctaggattttctatgatgatttaatgtcggaaattgctctggta |
199 |
Q |
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| T |
38851479 |
tcagcctataatgctaatagtataaactagttaacatgcatgtcctatgtcttcatctaggattttctatgatgatttaatttcagaaattactctggta |
38851578 |
T |
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| Q |
200 |
cgaaaaagtggcgacgaaaaacgacgagacaagtaaatgagcagttagtatttgtgaataccatttctatccttcacatattttctttggagtgcatgtc |
299 |
Q |
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| T |
38851579 |
cgaaaaagtggcgacgaaaaacaacgagacaagtaaatgagcagttagtatttgtgaataccatttctatccttcacatattttctttggagtgcatgtc |
38851678 |
T |
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| Q |
300 |
gcaccgtatagcaatgctctttagtttctctcgaggtctgtctatttctttagggattttcaaattgctagtccattaaactaacaaaaattgtaatttt |
399 |
Q |
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| T |
38851679 |
gcaccgtatagcaatgctctttagtttctctcgaggtctgtctattcctttaggaattttcaaattgctagtccattaaactaacaaaaattgtaatttt |
38851778 |
T |
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| Q |
400 |
atccttcaacatgtgatggatgcaagaactaagatattt |
438 |
Q |
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| T |
38851779 |
atccttcaacatgtgatggatgcaagaactaaggtattt |
38851817 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 35558559 - 35558472
Alignment:
| Q |
202 |
aaaaagtggcgacgaaaaacgacgagacaagtaaatgagcagttagtatttg--tgaataccatttctatccttcacatattttcttt |
287 |
Q |
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|||| ||| |||||||||||||| | || |||||| || ||||||||||| |||||||||||| ||| |||||| |||||||||| |
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| T |
35558559 |
aaaatgtgccgacgaaaaacgactaagcatgtaaattagtggttagtatttgagtgaataccatttttattcttcacctattttcttt |
35558472 |
T |
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