View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_6 (Length: 438)
Name: NF11546_low_6
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_6 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 13065269 - 13064848
Alignment:
| Q |
14 |
agacgaggaaactaaacatgaaatagaagaacaaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaagagaag |
113 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13065269 |
agacgaggaaactaaacacgaaatagaa---caaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaagagaag |
13065173 |
T |
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| Q |
114 |
aaagtggaaaggcacattcatgtagaagcgatcatttctaaagaaaaagatagagttgaaccaaaagaggtgaacactccggtagcatagagtttttatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13065172 |
aaagtggaaaggcacattcatgtagaagcgatcatttctaaggaaaaagatagagttgaaccaaaagaggtgaacactccggtagcatagagtttgaatc |
13065073 |
T |
|
| Q |
214 |
taacattcaatcatttaatgtcatataactttttcttatataatttgatcatttaaattttgactacagggtaccggtaccaaacaaaactttggcgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13065072 |
taacattcaatcatttaatgtcatataactttttcttatataatttgatcatttaaattttgactacagggtaccggtaccaaacaaaactttggcgtat |
13064973 |
T |
|
| Q |
314 |
caaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtagcagatgttcaagaatccaaggtttcaagttcaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
13064972 |
caaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtggcagatgttcaagaatccaaggtttcaagctcaac |
13064873 |
T |
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| Q |
414 |
aagtactcaacaatttgaagttgaa |
438 |
Q |
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| T |
13064872 |
aagtactcaacaatttgaagttgaa |
13064848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 13072023 - 13071602
Alignment:
| Q |
14 |
agacgaggaaactaaacatgaaatagaagaacaaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaagagaag |
113 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072023 |
agacgaggaaactaaacacgaaatagaa---caaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaagagaag |
13071927 |
T |
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| Q |
114 |
aaagtggaaaggcacattcatgtagaagcgatcatttctaaagaaaaagatagagttgaaccaaaagaggtgaacactccggtagcatagagtttttatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13071926 |
aaagtggaaaggcacattcatgtagaagcgatcatttctaaggaaaaagatagagttgaaccaaaagaggtgaacactccggtagcatagagtttgaatc |
13071827 |
T |
|
| Q |
214 |
taacattcaatcatttaatgtcatataactttttcttatataatttgatcatttaaattttgactacagggtaccggtaccaaacaaaactttggcgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13071826 |
taacattcaatcatttaatgtcatataactttttcttatataatttgatcatttaaattttgactacagggtaccggtaccaaacaaaactttggcgtat |
13071727 |
T |
|
| Q |
314 |
caaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtagcagatgttcaagaatccaaggtttcaagttcaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
13071726 |
caaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtggcagatgttcaagaatccaaggtttcaagctcaac |
13071627 |
T |
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| Q |
414 |
aagtactcaacaatttgaagttgaa |
438 |
Q |
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| T |
13071626 |
aagtactcaacaatttgaagttgaa |
13071602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 13076227 - 13075806
Alignment:
| Q |
14 |
agacgaggaaactaaacatgaaatagaagaacaaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaagagaag |
113 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13076227 |
agacgaggaaactaaacacgaaatagaa---caaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaagagaag |
13076131 |
T |
|
| Q |
114 |
aaagtggaaaggcacattcatgtagaagcgatcatttctaaagaaaaagatagagttgaaccaaaagaggtgaacactccggtagcatagagtttttatc |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13076130 |
aaagtggaaaggcacattcatgtagaagcgatcatttctaaggaaaaagatagagttgaaccaaaagaggtgaacactccggtagcatagagtttgaatc |
13076031 |
T |
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| Q |
214 |
taacattcaatcatttaatgtcatataactttttcttatataatttgatcatttaaattttgactacagggtaccggtaccaaacaaaactttggcgtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13076030 |
taacattcaatcatttaatgtcatataactttttcttatataatttgatcatttaaattttgactacagggtaccggtaccaaacaaaactttggcgtat |
13075931 |
T |
|
| Q |
314 |
caaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtagcagatgttcaagaatccaaggtttcaagttcaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
13075930 |
caaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtggcagatgttcaagaatccaaggtttcaagctcaac |
13075831 |
T |
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| Q |
414 |
aagtactcaacaatttgaagttgaa |
438 |
Q |
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||||||||||||||||||||||||| |
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| T |
13075830 |
aagtactcaacaatttgaagttgaa |
13075806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 13072806 - 13072708
Alignment:
| Q |
42 |
gaacaaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaaga---gaagaaagtggaaaggcacattcatgta |
137 |
Q |
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|||||| |||||| |||| |||||||| |||| |||||||| |||||||||| ||||||| |||||| |||| | |||||||| |||||||||||| |
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| T |
13072806 |
gaacaagaagaagataaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattcatgta |
13072708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 13077010 - 13076912
Alignment:
| Q |
42 |
gaacaaaaagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaaggtagaaga---gaagaaagtggaaaggcacattcatgta |
137 |
Q |
| |
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|||||| |||||| |||| |||||||| |||| |||||||| |||||||||| ||||||| |||||| |||| | |||||||| |||||||||||| |
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| T |
13077010 |
gaacaagaagaagataaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattcatgta |
13076912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 13072558 - 13072523
Alignment:
| Q |
269 |
aattttgactacagggtaccggtaccaaacaaaact |
304 |
Q |
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| T |
13072558 |
aattttgactacagggtaccggtaccaaacaaaact |
13072523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 13076762 - 13076727
Alignment:
| Q |
269 |
aattttgactacagggtaccggtaccaaacaaaact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13076762 |
aattttgactacagggtaccggtaccaaacaaaact |
13076727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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