View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_7 (Length: 408)
Name: NF11546_low_7
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 35655992 - 35655612
Alignment:
| Q |
18 |
aattgtagagcacaactctgtcaagttcaagggcgacgagtcagaagaagaaacctccttaatatattccatcattcttaaagtttcttcctctctaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655992 |
aattgtagagcacaactctgtcaagttcaagggcgacgagtcagaagaagaaacctccttaatatattccatcattcttaaagtttcttcctctctaaca |
35655893 |
T |
|
| Q |
118 |
caacggtaagatcgaactcttttgttacttagaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655892 |
caacggtaagatcgaactcttttgttacttagaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctt |
35655793 |
T |
|
| Q |
218 |
tggaactgaataaaaggatatcaaagattttaagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655792 |
tggaactgaataaaaggatatcaaagattttaagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgagga |
35655693 |
T |
|
| Q |
318 |
aactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655692 |
aactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtg |
35655612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 102 - 391
Target Start/End: Complemental strand, 35676988 - 35676699
Alignment:
| Q |
102 |
ttcttcctctctaacacaacggtaagatcgaactcttttgttacttagaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgca |
201 |
Q |
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||||||||||||||||| ||| |||||| |||||||||||||||| ||||||| ||| ||||||||||| ||||||||| ||||||||||||||||| || |
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| T |
35676988 |
ttcttcctctctaacacgacgataagattgaactcttttgttactcagaaggtttaatacactgagacttcttacttgtttccaatactcaccatatcca |
35676889 |
T |
|
| Q |
202 |
caacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttg |
301 |
Q |
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|||||||||||||||||||||| | | ||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
35676888 |
caacttgccacatctttggaaccgtagaaaaggatatcaaagattttacgatgtggcctatcagcgaagaccgagtcatgagttttcattacttctcttg |
35676789 |
T |
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| Q |
302 |
ctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagctaaatcttggagtg |
391 |
Q |
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|||||||||| ||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35676788 |
ctgcatcagcagaggaaactacaaccaccggtaccttaccaaaataaagaagcattaaagggccatatttgtgagctaaattttggagtg |
35676699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 99 - 398
Target Start/End: Complemental strand, 35641575 - 35641276
Alignment:
| Q |
99 |
agtttcttcctctctaacacaacggtaagatcgaactcttttgttacttagaaggtgtaacacactgagactccttacttgtctccaatactcaccatat |
198 |
Q |
| |
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|||||||||||||||||||| ||| |||||| |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35641575 |
agtttcttcctctctaacacgacgataagattgaacccttttgttactcaaaaggtgtaacacactaagactccttacttgtctccaatactcaccatat |
35641476 |
T |
|
| Q |
199 |
gcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtggcctatcacagaagactaagtcatgagttttcattacttttc |
298 |
Q |
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||||||||||| ||| ||||||||| | || | |||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| | | |
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| T |
35641475 |
gcacaacttgctacacctttggaaccatacaacatgatatcaaagattttacgttgtggcctatcagagaagatcaagtcatgagttttcattacctgac |
35641376 |
T |
|
| Q |
299 |
ttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtg |
398 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
35641375 |
ttgctgcatcagctgaggaaactacaaccactggtaccttccctaaataaagaagcattagaggaccatacttgtgagctaaatcttggagtgatctgtg |
35641276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 63 - 381
Target Start/End: Complemental strand, 35646531 - 35646213
Alignment:
| Q |
63 |
agaagaaacctccttaatatattccatcattcttaaagtttcttcctctctaacacaacggtaagatcgaactcttttgttacttagaaggtgtaacaca |
162 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||| |||||||||||||| |||| ||| |||||| |||||||| ||||||||| | |||||||| | |
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| T |
35646531 |
agaagaacactccttaatatgtttcatcattcgtaatgtttcttcctctctcacacgacgataagattgaactcttctgttacttaagatgtgtaacaaa |
35646432 |
T |
|
| Q |
163 |
ctgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtggcctat |
262 |
Q |
| |
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|| |||||||||| ||| |||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| || ||| |||||| | | ||| |||| |
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| T |
35646431 |
cttagactccttaattgcctccaatattcaccatatccacaactagccatatctttggaaccatataaaagtatgtcattcattttacgatatggtctat |
35646332 |
T |
|
| Q |
263 |
cacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagg |
362 |
Q |
| |
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|| |||| || || |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646331 |
cagagaaaaccaaatcatgagttttcattacttttcttgctgtatcagcagaggaaattacaagtactggaaccttcccaaaataaagaagcattaaagg |
35646232 |
T |
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| Q |
363 |
gccatatttgtgagctaaa |
381 |
Q |
| |
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|||||||||||||| |||| |
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| T |
35646231 |
gccatatttgtgagataaa |
35646213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 72 - 391
Target Start/End: Complemental strand, 35673563 - 35673244
Alignment:
| Q |
72 |
ctccttaatatattccatcattcttaaagtttcttcctctctaacacaacggtaagatcgaactcttttgttacttagaaggtgtaacacactgagactc |
171 |
Q |
| |
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|||||||| |||||| ||| |||||||||||||||| |||| ||||| |||||| |||||||||||||||||| | ||||||||||| || || | |
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| T |
35673563 |
ctccttaaaatattcaatccttcttaaagtttcttcttctcacgcacaa---taagattgaactcttttgttacttacatagtgtaacacacggacac-c |
35673468 |
T |
|
| Q |
172 |
cttacttgtctccaatactcaccatatgcacaacttgccacatctttggaact--ga-----ataaaaggatatcaaagattttaagttgtggcctatca |
264 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||| ||||||| | || | || | |||||||| ||||||| |||||| |||||| |
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|
| T |
35673467 |
tttacttgtctccattactcaccatttgcacaacttgctacatatttggaagttggaaccatacaatatgatatcaaggattttattttgtggtctatca |
35673368 |
T |
|
| Q |
265 |
cagaagactaagtcatgagttttc---attacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaag |
361 |
Q |
| |
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|||| | |||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
35673367 |
gagaaaagcaagtcatggattttcattattacttttcttgctgcatcagc-----aaac-acaagtactggaaccttcccaaaataaagaagcactaaag |
35673274 |
T |
|
| Q |
362 |
ggccatatttgtgagctaaatcttggagtg |
391 |
Q |
| |
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|||||| |||||||||| |||||| ||||| |
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|
| T |
35673273 |
ggccatttttgtgagctgaatcttagagtg |
35673244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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