View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11546_low_9 (Length: 403)
Name: NF11546_low_9
Description: NF11546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11546_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 36394471 - 36394102
Alignment:
| Q |
9 |
agcacagacattaactgctctagatctgattcatttcctaccccccgatctttactactcaaaatga-tcggaaaaagactatgtacctcaccacattaa |
107 |
Q |
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| T |
36394471 |
agcacagacattaactgctctagatctgcttcatttcctaccccccgatctttactactcaaaatgaatcggaaaaagactatgtacctcaccacattaa |
36394372 |
T |
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| Q |
108 |
gataagattgaattacaatagatactaactaccttcccaagtactaagtaatgg-ttccgtgttgatccctatctctccatccattatatatagagcaca |
206 |
Q |
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| T |
36394371 |
gataagattgaattacaatagatactagctaccttcccaactactaagtaatggttttagtattgatccctatctctccatccattatatatagagctta |
36394272 |
T |
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| Q |
207 |
ctttctgacaagttttctcatcattggataccaaatattccatttgaattggtattgaagtattgaacaatggattcgaaaaaagctatccttatcctaa |
306 |
Q |
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| T |
36394271 |
ctttcttacaagttttctcatcattggctaccaaatatcccatttgaattg--------gtattgaacaatggattcgaaaaaagcaatccttatcctag |
36394180 |
T |
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| Q |
307 |
gcctattggctatcattcttcttatctcctcagaggtttcggctagggacttaactaaggcatcctctaatacccaaa |
384 |
Q |
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| T |
36394179 |
gtctattggctatcattcttcttatctcctcagaggtttcggctagggacttaactgaggcatcctctaatacccaaa |
36394102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 362
Target Start/End: Complemental strand, 36493651 - 36493485
Alignment:
| Q |
187 |
tccattatatatagagcacactttctgacaagttttctcatcattggataccaaatattccatttgaattggtattgaagtattgaacaatggattcgaa |
286 |
Q |
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| T |
36493651 |
tccattatatatagagcacactt-cttactagttttctcatcgttcactaccaaatattacatttgaacagatattgaa--------caatggattcgaa |
36493561 |
T |
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| Q |
287 |
aaaagctatccttatcctaagcctattggctatcattcttcttatctcctcagaggtttcggctagggacttaact |
362 |
Q |
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| T |
36493560 |
aaaggcaatcctcatcctaggcctcttggctatggttcttcttatttcctcagaagtgtccgctagggacttaact |
36493485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 36476433 - 36476338
Alignment:
| Q |
267 |
tattgaacaatggattcgaaaaaagctatccttatcctaagcctattggctatcattcttcttatctcctcagaggtttcggctagggacttaact |
362 |
Q |
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| T |
36476433 |
tattgaacaatggattcgaaaaaggcaatcctcatcctaggcctcttggctatggttcttcttatttcttcagaagtctcagccagggacttaact |
36476338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 36436865 - 36436815
Alignment:
| Q |
269 |
ttgaacaatggattcgaaaaaagctatccttatcctaagcctattggctat |
319 |
Q |
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||||||||||||||||||||| || ||||| || ||| ||||||||||||| |
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| T |
36436865 |
ttgaacaatggattcgaaaaaggcaatcctcatgctaggcctattggctat |
36436815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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