View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11547_high_17 (Length: 254)

Name: NF11547_high_17
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11547_high_17
NF11547_high_17
[»] chr5 (21 HSPs)
chr5 (3-242)||(30677196-30677435)
chr5 (4-242)||(30242400-30242638)
chr5 (18-239)||(30749494-30749718)
chr5 (18-242)||(29872037-29872252)
chr5 (18-242)||(30060220-30060447)
chr5 (147-242)||(30338550-30338645)
chr5 (18-173)||(30206376-30206531)
chr5 (147-242)||(30483387-30483482)
chr5 (3-200)||(30399913-30400110)
chr5 (18-190)||(17418243-17418412)
chr5 (1-49)||(30483238-30483286)
chr5 (1-49)||(30338746-30338794)
chr5 (3-57)||(29853147-29853201)
chr5 (148-241)||(29853295-29853388)
chr5 (147-200)||(30435799-30435852)
chr5 (147-200)||(30713495-30713548)
chr5 (18-49)||(30435673-30435704)
chr5 (144-183)||(30521712-30521751)
chr5 (144-183)||(30562052-30562091)
chr5 (149-179)||(30331222-30331252)
chr5 (21-95)||(30713600-30713671)
[»] chr4 (1 HSPs)
chr4 (22-237)||(20296615-20296839)
[»] chr7 (1 HSPs)
chr7 (18-179)||(26707195-26707350)
[»] chr3 (1 HSPs)
chr3 (3-117)||(25294022-25294136)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 30677435 - 30677196
Alignment:
3 tatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtat 102  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
30677435 tatgtcaagagaacgaagttccaaataccttaaatgaattaaactccctagtgatggcatccggataaaggatgtgcataaaacccgaagagaaaggtat 30677336  T
103 gttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaa 202  Q
    ||||||||| ||||| |||||| |  ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |    
30677335 gttgggaagaaatcatgtttttttttggaataataactcaactgaaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataaca 30677236  T
203 agttgttgctatcaaaaccaatgtggtgtgtgctttttga 242  Q
    |||  |||   |||||||||||||||||||||||||||||    
30677235 agtctttgaggtcaaaaccaatgtggtgtgtgctttttga 30677196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 30242638 - 30242400
Alignment:
4 atgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatg 103  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
30242638 atgtcaagagaacgaagttccaaataccttaaatgaattaaactccctagtgatggcatccggataaaggatgtgcataaaacccgaagagaaaggtatg 30242539  T
104 ttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaa 203  Q
    ||||||||| |||| |||||| |  || |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||    
30242538 ttgggaagttatcatgtttttttttggcataataactcaactgaaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaa 30242439  T
204 gttgttgctatcaaaaccaatgtggtgtgtgctttttga 242  Q
    ||  |||   |||||||||||||||||||||||||||||    
30242438 gtctttgtagtcaaaaccaatgtggtgtgtgctttttga 30242400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 30749494 - 30749718
Alignment:
18 aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
30749494 aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaaaggtttgttgggaagtaatca 30749593  T
118 agtttttctcgggaataagaact---caactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctat 214  Q
     ||||||||   ||  ||  |||   ||||| |||| |||||||||||||||||||| |||||||||||| ||  |||||||||||  ||| |||  | |    
30749594 tgtttttcttttgacaaaatactacacaactcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtcgttattgt 30749693  T
215 caaaaccaatgtggtgtgtgctttt 239  Q
    |||||| ||| ||||||||||||||    
30749694 caaaactaatatggtgtgtgctttt 30749718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 29872037 - 29872252
Alignment:
18 aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatca 117  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||||||| |||||| | |||| |||||||| ||||    
29872037 aagtcccaaataccttaaatgaattaaactccccagtgatggcatccggataaaggatgcgcataaaacccggagagaaagatatgctgggaagttatca 29872136  T
118 agtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaa 217  Q
     |||||| | || || || |||||      |||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |  |||| |   ||||    
29872137 tgttttttttggtaagaataactc------aacaatgttctcaaggattcaacttttttgaaagcattttcatcaaaggataacactttgtag---tcaa 29872227  T
218 aaccaatgtggtgtgtgctttttga 242  Q
     | ||||||||||||||||||||||    
29872228 caacaatgtggtgtgtgctttttga 29872252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 30060220 - 30060447
Alignment:
18 aagttccaaataccttaaatgaattaaactccctagtgatggcatct-ggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatc 116  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||| | ||| |||||||||||||||| ||| |||||||||||||||    
30060220 aagttccaaataccttaaatgaattaaactacctagtaatggc-tctcggataaaggttatgcataaaacccgaagagaaaggtttgttgggaagtaatc 30060318  T
117 aagtttttctcgggaataagaact---caactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgcta 213  Q
    | ||||||||   ||| ||| |||    |||| |||| |||||||||||||||||||| |||||||||||| ||  |||||||||||  |||  ||  |     
30060319 atgtttttcttttgaaaaagtactacaaaactcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattg 30060418  T
214 tcaaaaccaatgtggtgtgtgctttttga 242  Q
    ||||||| |||||||||||||||||||||    
30060419 tcaaaactaatgtggtgtgtgctttttga 30060447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 30338645 - 30338550
Alignment:
147 aaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttga 242  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
30338645 aaacaaagttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaagttgttgctgtcaaaaccaatgtggtgtgtgctttttga 30338550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 30206376 - 30206531
Alignment:
18 aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||| ||| ||||||  ||||||||    
30206376 aagttccaaataccttaaatgaattaaactccctagtgatggtacctggataaaggatgtgcataaaacccgaagggaacggtttgttggcgagtaatca 30206475  T
118 agtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttt 173  Q
     |||||  |  ||  |||  | |||||||||||||||||| |||||||||||||||    
30206476 tgttttgttttggtgtaatgattcaactgaaacaatgttctcaaggattcaacttt 30206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 30483387 - 30483482
Alignment:
147 aaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttga 242  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | |||||||||||||||||||||||||||    
30483387 aaacaatgttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaatttcttgctgttaaaaccaatgtggtgtgtgctttttga 30483482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 30399913 - 30400110
Alignment:
3 tatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtat 102  Q
    |||||| ||| ||| ||| |||||||||||||||||||||||||| |||||| |||||  | ||||||||| ||||| |||||||||||||||| ||| |    
30399913 tatgtcaagataaagaagctccaaataccttaaatgaattaaactacctagtaatggcccccggataaaggttgtgcataaaacccgaagagaagggtct 30400012  T
103 gttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataa 200  Q
    ||||||||||||||  ||| ||||   | | ||| |   |||| |||| ||||||||||||||||||||||| |||| |||  ||||||||| |||||    
30400013 gttgggaagtaatcctgttcttcttttggaaaagtagaaaactcaaaccatgttcgcaaggattcaacttttctgaaggcaccctcatcgaatgataa 30400110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 17418412 - 17418243
Alignment:
18 aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatca 117  Q
    |||||| ||||||| |||||||||||||||| ||||||| || | ||||| | ||||||||| |||||||||||||||||||| | |||| ||||  |||    
17418412 aagttctaaataccataaatgaattaaactctctagtgagggtacctggagagaggatgtgcataaaacccgaagagaatggtttcttggcaagtggtca 17418313  T
118 agtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcat 190  Q
     |||||  || |   || || || |||||||||||||||||||||||||||||||||||||| |||| |||||    
17418312 tgttttggtctg--ttatgatct-aactgaaacaatgttcgcaaggattcaacttttttgaaggcatcctcat 17418243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30483238 - 30483286
Alignment:
1 tctatgtcgagagaaataagttccaaataccttaaatgaattaaactcc 49  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||    
30483238 tctatgtcaagataaataagttccaaataccttaaatgaattaaactcc 30483286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30338794 - 30338746
Alignment:
1 tctatgtcgagagaaataagttccaaataccttaaatgaattaaactcc 49  Q
    |||||||| ||| || |||||||||||||||||||||||||||||||||    
30338794 tctatgtcaagataagtaagttccaaataccttaaatgaattaaactcc 30338746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 29853147 - 29853201
Alignment:
3 tatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgat 57  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||  ||||||||    
29853147 tatgtcaagagaacgaagttccaaataccttaaatgaattaaactttctagtgat 29853201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 29853295 - 29853388
Alignment:
148 aacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttg 241  Q
    ||||||||||||||||||||||||||||| || |||  ||||||||| ||||| || || | |   | |||||  |||||||||||||||||||    
29853295 aacaatgttcgcaaggattcaacttttttaaaggcaccctcatcgaatgataacaaattatcggagttaaaacttatgtggtgtgtgctttttg 29853388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 30435799 - 30435852
Alignment:
147 aaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataa 200  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||| |||||    
30435799 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataa 30435852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 30713548 - 30713495
Alignment:
147 aaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataa 200  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||| |||||    
30713548 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataa 30713495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 30435673 - 30435704
Alignment:
18 aagttccaaataccttaaatgaattaaactcc 49  Q
    ||||||||||||||||||||||||||||||||    
30435673 aagttccaaataccttaaatgaattaaactcc 30435704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 30521751 - 30521712
Alignment:
144 ctgaaacaatgttcgcaaggattcaacttttttgaaagca 183  Q
    |||||||||||||||||| |||||||||||| ||||||||    
30521751 ctgaaacaatgttcgcaacgattcaacttttgtgaaagca 30521712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 30562091 - 30562052
Alignment:
144 ctgaaacaatgttcgcaaggattcaacttttttgaaagca 183  Q
    |||||||||||||||||| |||||||||||| ||||||||    
30562091 ctgaaacaatgttcgcaacgattcaacttttgtgaaagca 30562052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 30331252 - 30331222
Alignment:
149 acaatgttcgcaaggattcaacttttttgaa 179  Q
    |||||||||||||||||||||||||||||||    
30331252 acaatgttcgcaaggattcaacttttttgaa 30331222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 30713671 - 30713600
Alignment:
21 ttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagaga 95  Q
    ||||||||||||||||||||||||||||| ||    ||| | ||| | ||||||||||| |||||| ||||||||    
30713671 ttccaaataccttaaatgaattaaactccata---ctgggacctgtagaaaggatgtgcttaaaactcgaagaga 30713600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 20296839 - 20296615
Alignment:
22 tccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtt 121  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||| ||||||||||||| ||||||||||||||| ||| |||||||| ||||||| | |    
20296839 tccaaataccttaaatgaattaaactctctagtgatcgcacatgggtaaaggatgtgcgcaaaacccgaagagaaaggtttgttgggatgtaatcatgat 20296740  T
122 tttctcgggaataa-ga--------actcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgct 212  Q
     |  |  ||||||| ||        ||||||||||||||||||||||||||||||||||| |||||| |||  ||  | || |||||| ||||   ||      
20296739 ctattttggaataatgatgataatcactcaactgaaacaatgttcgcaaggattcaacttctttgaaggcacccttgttgatggataacaagtctgtgta 20296640  T
213 atcaaaaccaatgtggtgtgtgctt 237  Q
     ||||||||||||||||||||||||    
20296639 gtcaaaaccaatgtggtgtgtgctt 20296615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 26707195 - 26707350
Alignment:
18 aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatca 117  Q
    ||||||||||||||||||||||||||| ||||||||||||   | ||||      ||||||| |||||||||||||||  ||| |  |||||||| ||||    
26707195 aagttccaaataccttaaatgaattaagctccctagtgataatacctgg------gatgtgcataaaacccgaagagagcggtttaatgggaagtgatca 26707288  T
118 agtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaa 179  Q
     | |||| | ||||||||    |||| | |||||||||||||||||||||||||||||||||    
26707289 tggttttttggggaataattcttcaagtcaaacaatgttcgcaaggattcaacttttttgaa 26707350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 25294136 - 25294022
Alignment:
3 tatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtat 102  Q
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25294136 tatgtcaagagaataaagtgccaaataccttaaatgaattaagcttcctattgatggtacttggataaaggatgtgcataaaactcgaagacaacggttt 25294037  T
103 gttgggaagtaatca 117  Q
    |||| ||||| ||||    
25294036 gttgagaagtgatca 25294022  T

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