View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11547_high_22 (Length: 235)
Name: NF11547_high_22
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 45745516 - 45745724
Alignment:
| Q |
9 |
agagagaagaagaaagctttaatagtagtttccacaaaaaacattcctcacagaaaagcacaaaatgcaataagagacaactaaacgaaaaatcgatggt |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45745516 |
agagaaaagaagaaagctttaatagtagtttccacaaaaaacattcctcacagaaaagcacaaaatgcaataagagacaactaaacgaaaaatcgatggt |
45745615 |
T |
|
| Q |
109 |
cgatgacaaaaatggtgttccaactgtgaacaagtttgatgaatcaagtaggtcattttttccggatgacgattatatagtattctgctttgataaagat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45745616 |
cgatgacaaaaatggtgttccaactgtgaacaagtttgatgaatcaagtaggtcattttttccggatgacgattatatagtattctgctttgataaagat |
45745715 |
T |
|
| Q |
209 |
ggaccattt |
217 |
Q |
| |
|
||||||||| |
|
|
| T |
45745716 |
ggaccattt |
45745724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University