View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11547_low_1 (Length: 832)
Name: NF11547_low_1
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_1 |
 | |
|
| [»] scaffold0769 (4 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 29055170 - 29054776
Alignment:
| Q |
19 |
agaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggtttataagaatgtggagttggcgaagatttcagctaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29055170 |
agaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggtatataagaatgtggagttggcgaagatttcagctaaga |
29055071 |
T |
|
| Q |
119 |
aactatttgagattattccaacagctctgaaaattatgttaccatattcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29055070 |
aactatttgagattattccaacagctctgaaaattatgttaccatattcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaatg |
29054971 |
T |
|
| Q |
219 |
ctgatgaaagagagaggaattacaaaaactccaggatgtagttggcttcatgtaggtaatagagttcacacttttgttggagacaaaagtaatatggaga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29054970 |
atgatgaaagagagaggaattacaaaaactccaggatgtagttggcttcatgtaggtaatagagttcacacttttgttggagacaaaagtaatatggaga |
29054871 |
T |
|
| Q |
319 |
gtgataaaatctatcactttttggatgagttggttgagaaagtaaaagtggccggatataaagctgacactgattatgttcttggtgatattaat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29054870 |
gtgataaaatctatcactttttggatgagttggttgagaaagtaaaagtggccggatataaggctgacactgattatgttcttggtgatattaat |
29054776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 417 - 830
Target Start/End: Complemental strand, 29054741 - 29054336
Alignment:
| Q |
417 |
gagaagcttgctgttgcatttgggatacttaatttgaatg------cg-------gttttttaaaaatttgagaatatgtggtgattgtcacaatgccat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29054741 |
gagaagcttgctgttgcatttgggatacttaatttgaatggacagtcgacaatgcggtttttaaaaatttgagaatatgtggtgattgtcacaatgccat |
29054642 |
T |
|
| Q |
504 |
tttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatgg |
603 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29054641 |
ttagtatatgtctaaagttgtttgtgtgattattactgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatgg |
29054542 |
T |
|
| Q |
604 |
tgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcatcagattgttcgtgactctctcgtgg |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29054541 |
tgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcatcagattgttcatgactctctcgtgc |
29054442 |
T |
|
| Q |
704 |
gtatgaacccactcgctcgactcgtggcgattctgtctaacttgcttgagcatctcactacgaactgtctcttagatcatgtattttattctctcaattt |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29054441 |
gtatgaacccactcgctcgactcgtggcgattctgt---------------------ctacgaactgtctcttagatcatgtattttattctctcaattt |
29054363 |
T |
|
| Q |
804 |
gttccagagatcgttcatctcactcga |
830 |
Q |
| |
|
|||||||||||||||||| || ||||| |
|
|
| T |
29054362 |
gttccagagatcgttcatgtctctcga |
29054336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 34636315 - 34636001
Alignment:
| Q |
18 |
aagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggtttataagaatgtggagttggcgaagatttcagctaag |
117 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
34636315 |
aagaatgcctatgggacca---actgctggtgcttggaaatcactccttgctggttgtagggtttataagaatgtggagttggcaaaaatttcagctaag |
34636219 |
T |
|
| Q |
118 |
aaactatttgagattattccaa-cagctctgaaaattatgttaccatattcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaa |
216 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | | |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34636218 |
aaactatttgagattgagccaagcaggtctagagactatgttgctttatgcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaa |
34636119 |
T |
|
| Q |
217 |
tgctgatgaaagagagaggaattacaaaaactccaggatgtagttggcttcatgtaggtaatagagttcacacttttgt---tggagacaaaagtaatat |
313 |
Q |
| |
|
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
34636118 |
tgtttatgaaagagagtggaattacaaaaactccaggatgtagttggcttcatgtgggaaatagagttcacaactttgttgctggagacaaaagtaatat |
34636019 |
T |
|
| Q |
314 |
ggagagtgataaaatcta |
331 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
34636018 |
ggagaatgataaaatcta |
34636001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 461 - 675
Target Start/End: Complemental strand, 34635522 - 34635308
Alignment:
| Q |
461 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
560 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||||||||||| ||||| |
|
|
| T |
34635522 |
tttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtt |
34635423 |
T |
|
| Q |
561 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
660 |
Q |
| |
|
| |||||||||||||||||| |||||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
34635422 |
tcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactatttgactaagattattgggaataaggggtcacaatgatcctatctgagcct |
34635323 |
T |
|
| Q |
661 |
gtctaactcaaattt |
675 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
34635322 |
ttccaactcaaattt |
34635308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 469 - 612
Target Start/End: Original strand, 29312352 - 29312495
Alignment:
| Q |
469 |
aatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggttttatcact |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
29312352 |
aatttgagaatatgtggtgattgtcacaatgccattaagtatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcact |
29312451 |
T |
|
| Q |
569 |
tcaaaaatggaagttgttcttgtaaagacttatggtgattattt |
612 |
Q |
| |
|
||||||||| || |||||||||||| || ||||||||| ||||| |
|
|
| T |
29312452 |
tcaaaaatgaaaattgttcttgtaatgatttatggtgaatattt |
29312495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 29312062 - 29312198
Alignment:
| Q |
197 |
tgaagcttcaaaaatcagaatgctgatgaaagagagaggaattacaaaaactcca-ggatgta-gttggcttcatgtaggtaatagagttcacacttttg |
294 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||| |||||||| || |||| | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
29312062 |
tgaagcttcaaaaatcaaaatattgattcaagagagaggaattataaaaactcagtggctgtaagctggcttcatgtgggaaatagagttcacacttttg |
29312161 |
T |
|
| Q |
295 |
t---tggagacaaaagtaatatggagagtgataaaat |
328 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
29312162 |
ttgctggagacaaaagtaatattgagagtgatgaaat |
29312198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 34635705 - 34635611
Alignment:
| Q |
323 |
taaaatctatcactttttggatgagttggttgagaaagtaaaagtggccggatataaagctgacactgattatgttcttggtgatattaatcaagag |
419 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |||||| ||| |||||| |||| ||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
34635705 |
taaaatctataactttttagatgagttggttgagaaaataaaagcggctggatat-aagc-gacactgataatgttctgcatgatattgatcaagag |
34635611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 34635580 - 34635541
Alignment:
| Q |
417 |
gagaagcttgctgttgcatttgggatacttaatttgaatg |
456 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34635580 |
gagaagcttgccgttgcatttgggatacttaatttgaatg |
34635541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 456
Target Start/End: Original strand, 29312287 - 29312326
Alignment:
| Q |
417 |
gagaagcttgctgttgcatttgggatacttaatttgaatg |
456 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
29312287 |
gagaagcttgcggttgcattcgggatacttaatttgaatg |
29312326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 36 - 419
Target Start/End: Complemental strand, 13792889 - 13792502
Alignment:
| Q |
36 |
accaactgctattgattggaaagcactccttggtggttgtagggtttataagaatgtggagttggcgaagatttcagctaagaaactatttgagattatt |
135 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
13792889 |
accaactgctattgcttggaaagcattccttgctggttgtagggtttataagaatgtggagttggcaaaaatttcagctaagaaactatttgagattgac |
13792790 |
T |
|
| Q |
136 |
ccaa-cagctctgaaaattatgttaccatattcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaatgctgatgaaagagagag |
234 |
Q |
| |
|
|||| | | |||| |||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
13792789 |
ccaaacggatctgcaaattatgttactttattcaacattcttgttacagctaaattgtggagtgaagcttcaaaaatcagaaagttgatgaaagagagag |
13792690 |
T |
|
| Q |
235 |
gaattacaaaaactccaggatgtagttggcttcatgtaggtaatagagttcacacttttgt---tggagacaaaagtaatatggagagtgataaaatcta |
331 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13792689 |
gaattacaaaaactccaggttgtagttggtttcatgtgggaaatagagttcacacttttgttgctggagacaaaagtaatatggagagtgataaaatcta |
13792590 |
T |
|
| Q |
332 |
tcactttttggatgagttggttgagaaagtaaaagtggccggatataaagctgacactgattatgttcttggtgatattaatcaagag |
419 |
Q |
| |
|
| ||||||||||||||||| ||| ||| |||||| ||| |||||||| ||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
13792589 |
taactttttggatgagttgtttgcaaaaataaaagcggctggatataagcctgacactgattatgttctgcatgatattgatcaagag |
13792502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 36 - 400
Target Start/End: Original strand, 28743353 - 28743721
Alignment:
| Q |
36 |
accaactgctattgattggaaagcactccttggtggttgtagggtttataagaatgtggagttggcgaagatttcagctaagaaactatttgagattatt |
135 |
Q |
| |
|
||||||||| | || |||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28743353 |
accaactgccagtgcttggggagcactccttgctgcttgtagggtttataagaatgtggagttggcgaaaatttcagctaagaaactatttgagattgag |
28743452 |
T |
|
| Q |
136 |
cc-aacagctctgaaaattatgttaccatattcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaatgctgatgaaagagagag |
234 |
Q |
| |
|
|| |||| | ||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||| || ||||||| ||||||||||| ||| |
|
|
| T |
28743453 |
cctaacaaccctggaaattatgtttctttattcaacattcttgttactgccaaaatgtggagtgaagcttcacaagtcagaatattgatgaaagagcgag |
28743552 |
T |
|
| Q |
235 |
gaattacaaaaactccaggatgtagttggcttcatgtaggtaatagagttcacactt---ttgttggagacaaaagtaatatggagagtgataaaatcta |
331 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
28743553 |
gaattacaaaaacaccaggatgtagttggcttcaagtgggaaataaagttcacacttttgttgttggagacaaaagtaatattgaaagtgataaaatcta |
28743652 |
T |
|
| Q |
332 |
tcactttttggatgagttggttgagaaagtaaaagtggccggatataaagctgacactgattatgttct |
400 |
Q |
| |
|
| |||||||||| ||||||||||||||| | ||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
28743653 |
taactttttggacgagttggttgagaaaatgaaaatggctggatataagcctgacactgattatgttct |
28743721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 417 - 675
Target Start/End: Original strand, 28743771 - 28744043
Alignment:
| Q |
417 |
gagaagcttgctgttgcatttgggatacttaatttgaatg--------------cggttttttaaaaatttgagaatatgtggtgattgtcacaatgcca |
502 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
28743771 |
gagaagcttgctgttgcctttgggatacttaatttgaatggacagtcgacaatacgggtttttaagaatttgagaatatgcggtgattgtcacaatgcca |
28743870 |
T |
|
| Q |
503 |
ttttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatg |
602 |
Q |
| |
|
|| |||||||||||| ||||| ||| || |||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28743871 |
ttaagtatatgtctaaggttgtcggtgttataattgttgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagacttatg |
28743970 |
T |
|
| Q |
603 |
gtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaattt |
675 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||| || || | ||||| |||| |||||||||||||||| |
|
|
| T |
28743971 |
gtgattatttgaatcagattattgggattaagtggtgacgataatcctatctgagtttgtctaactcaaattt |
28744043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 417 - 619
Target Start/End: Complemental strand, 13792471 - 13792255
Alignment:
| Q |
417 |
gagaagcttgctgttgcatttgggatacttaatttgaatg--------------cggttttttaaaaatttgagaatatgtggtgattgtcacaatgcca |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
13792471 |
gagaagcttgctgttgcatttgggatacttaatttgaatggacagtcgacgatacgggtttttaagaatttgagaatatgtggtgattgtcataatgcca |
13792372 |
T |
|
| Q |
503 |
ttttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatg |
602 |
Q |
| |
|
|| ||||||||| || |||||| ||||| |||| || |||||||||||||||||| |||||||||||||||||| ||||||||||||||| || || |
|
|
| T |
13792371 |
ttaagtatatgtccaatgttgttggtgtgacgattgtcgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagatttttg |
13792272 |
T |
|
| Q |
603 |
gtgattatttgactcag |
619 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13792271 |
gtgattatttgactcag |
13792255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 662
Target Start/End: Complemental strand, 13792149 - 13792094
Alignment:
| Q |
607 |
ttatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgt |
662 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| ||||| |||| |||| |
|
|
| T |
13792149 |
ttatttgactcggattattgggaataagtcgtcacaatgatcctatctgagtgtgt |
13792094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 170; Significance: 8e-91; HSPs: 4)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 3599 - 3913
Alignment:
| Q |
18 |
aagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggtttataagaatgtggagttggcgaagatttcagctaag |
117 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
3599 |
aagaatgcctatgggacca---actgctggtgcttggaaatcactccttgctggttgtagggtttataagaatgtggagttggcaaaaatttcagctaag |
3695 |
T |
|
| Q |
118 |
aaactatttgagattattccaa-cagctctgaaaattatgttaccatattcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaa |
216 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | | |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3696 |
aaactatttgagattgagccaagcaggtctagagactatgttgctttatgcaacattcttgttactgccaaattatggagtgaagcttcaaaaatcagaa |
3795 |
T |
|
| Q |
217 |
tgctgatgaaagagagaggaattacaaaaactccaggatgtagttggcttcatgtaggtaatagagttcacacttttgt---tggagacaaaagtaatat |
313 |
Q |
| |
|
|| | || |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
3796 |
tgtttatcaaagagagtggaattacaaaaactccaggatgtagttggcttcatgtgggaaatagagttcacaactttgttgctggagacaaaagtaatat |
3895 |
T |
|
| Q |
314 |
ggagagtgataaaatcta |
331 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
3896 |
ggagaatgataaaatcta |
3913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 461 - 675
Target Start/End: Original strand, 4392 - 4606
Alignment:
| Q |
461 |
tttttaaaaatttgagaatatgtggtgattgtcacaatgccattttgtatatgtctaaagttgttaatgtgattattgctgttagagactccttgaggtt |
560 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||||||||||| ||||| |
|
|
| T |
4392 |
tttttaagaatttgagaatatgtggtgattgtcacaatgccattaagtatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtt |
4491 |
T |
|
| Q |
561 |
ttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgattatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgt |
660 |
Q |
| |
|
| |||||||||||||||||| |||||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
4492 |
tcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgactatttgactaagattattgggaataaggggtcacaatgatcctatctgagcct |
4591 |
T |
|
| Q |
661 |
gtctaactcaaattt |
675 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
4592 |
ttccaactcaaattt |
4606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 4209 - 4303
Alignment:
| Q |
323 |
taaaatctatcactttttggatgagttggttgagaaagtaaaagtggccggatataaagctgacactgattatgttcttggtgatattaatcaagag |
419 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |||||| ||| |||||| |||| ||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
4209 |
taaaatctataactttttagatgagttggttgagaaaataaaagcggctggatat-aagc-gacactgataatgttctgcatgatattgatcaagag |
4303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 417 - 456
Target Start/End: Original strand, 4334 - 4373
Alignment:
| Q |
417 |
gagaagcttgctgttgcatttgggatacttaatttgaatg |
456 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4334 |
gagaagcttgccgttgcatttgggatacttaatttgaatg |
4373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University