View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_10 (Length: 358)
Name: NF11547_low_10
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 7105829 - 7105495
Alignment:
| Q |
18 |
gtttggttatcatgtctgtgactcggtatcctgcccctataattggtcttcttaaaatctgggattacattaaataaccgttatgcaatacacaaatctt |
117 |
Q |
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| T |
7105829 |
gtttggttatcatgtctgtgactcggtatcctgcccctataattggtcttcttaaaatctggtattacattaaataaccgttatgcaatacacaaatctt |
7105730 |
T |
|
| Q |
118 |
ttacatccgaattaaaagtgtgtaaagatttgaatttggaagcaaggaatccctacggtggtgacagtttgttcttctgacaagcagagccctctagttt |
217 |
Q |
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| T |
7105729 |
ttacatccgaattaaaagtgtgtaaagatttgaatttggaagcaaggaatccctacggtggtgacagtttgttcttctgacaagcagagccctctagttt |
7105630 |
T |
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| Q |
218 |
caggtaaatggtaatgaccctatgttcgatagtgaaaagtaaaataacaaaccgaagttaggacaacaaaaagacagaagtaacaatactcttcaaatga |
317 |
Q |
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| T |
7105629 |
caggtaaatggtaatgaccctatgttcgatagtgaaaagcaaaataacaaaccgaagttaggacaacaaaaagacagaagtaacaatactcttcaaatga |
7105530 |
T |
|
| Q |
318 |
aagttttaacacattaacacatacattcttctctc |
352 |
Q |
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| T |
7105529 |
aagttttaacacattaacacatacattcttttctc |
7105495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 7093613 - 7093374
Alignment:
| Q |
20 |
ttggttatcatgtctgtgactcggtatcctgcccctataattggtcttcttaaaatctgggattacattaaata------accgttatgcaatacacaaa |
113 |
Q |
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| T |
7093613 |
ttggttatcatgtctgtgactcggtgtcctgcccctatacttggttttcttaaaatctggtattacattaaatatataaaactgttatattatacacaaa |
7093514 |
T |
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| Q |
114 |
tcttttacatccgaattaaaagtgtgtaaagatttgaatttggaagcaaggaatccctacggtggtgacagtttgttcttctgacaagcagagccctcta |
213 |
Q |
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||| ||| ||| ||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||| |
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| T |
7093513 |
tctcttatatcagaattaaaagtttgaaaagattcgaatttggaagcaaggaatccctactgtggtgacggtttgttcctctgacaagcagagtcctcta |
7093414 |
T |
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| Q |
214 |
gtttcaggtaaatggtaatgaccctatgttcgatagtgaa |
253 |
Q |
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| T |
7093413 |
gtttcaggtaaatggtgatgaccctacattcaatagtgaa |
7093374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 33406840 - 33406904
Alignment:
| Q |
165 |
aatccctacggtggtgacagtttgttcttctgacaagcagagccctctagtttcaggtaaatggt |
229 |
Q |
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| T |
33406840 |
aatccttacagtggggacagtttgctcttctgacaagcaaagtcctctggtttcaggtaaatggt |
33406904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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