View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_11 (Length: 354)
Name: NF11547_low_11
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_11 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 41548504 - 41548157
Alignment:
| Q |
7 |
gagatgaagatgatgaagttggagcatttcctatgacaactcttgacttagaaggaatgactatcccagatcttgttcaagtattgcttggatctttaca |
106 |
Q |
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| T |
41548504 |
gagacgaagatgatgaagttggagcatttcctatgacaactcttgacttagaaggaatgactatcccagatcttgttcaagtattgcttggatctttaca |
41548405 |
T |
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| Q |
107 |
gatggaaacttatgaaagagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaaga |
206 |
Q |
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| T |
41548404 |
gatggaaacttatgaaagagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaaga |
41548305 |
T |
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| Q |
207 |
caacaacttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagtt |
306 |
Q |
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| T |
41548304 |
caacaacttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagtt |
41548205 |
T |
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| Q |
307 |
ataatgctctcttgaaggaagccaagacggctgaaaaaactcataata |
354 |
Q |
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| T |
41548204 |
ataatgctctcttgaaggaagccaagacggctgaaaaaactcataata |
41548157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 41509743 - 41509652
Alignment:
| Q |
217 |
aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
308 |
Q |
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| T |
41509743 |
aaatggagaaacttgcaaggataaaggctgaggaagagttaaagaaaagagaggaaatttttcagaaagggaagaaagtacaagaacgttat |
41509652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 41519969 - 41519878
Alignment:
| Q |
217 |
aaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
308 |
Q |
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| T |
41519969 |
aaatggagaaacttgcaaggatacaggccgaggaagagtttaagaaaagagaggaactttgtcagaaagggaagaaagtacaagaacgttat |
41519878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 41515732 - 41515637
Alignment:
| Q |
213 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttat |
308 |
Q |
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| T |
41515732 |
cttcaactggagaaactctcaaggttgtacgctgagtctgagtttaagaaaagagaagagatttgtgagaaagggaagaaagttcaagaaagttat |
41515637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 41524655 - 41524548
Alignment:
| Q |
220 |
tggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctctt |
319 |
Q |
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| T |
41524655 |
tggagaaactctcaaggttatatgctgagtctgagtttaagaaaagagaagagatttgtgaaaaagggaagaaagttcaagaaagttatgaagctctttt |
41524556 |
T |
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| Q |
320 |
gaaggaag |
327 |
Q |
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||| |||| |
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| T |
41524555 |
gaaagaag |
41524548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 41469970 - 41469895
Alignment:
| Q |
252 |
gagttaaagaaaagagaggaaatttgtcagaaaatgaagaaagtacaagaaagttataatgctctcttgaaggaag |
327 |
Q |
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| T |
41469970 |
gagtttaagaaaagagaggaaatttgtgagaaaggtaagaaagtaaaagaaagttatgaagctcttttgaaagaag |
41469895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 41509849 - 41509765
Alignment:
| Q |
123 |
agagttgaaggtgttttggtgagaagggatttggcactcaaagaccagattcaacacttacataagaatgttgaaatggaaagac |
207 |
Q |
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| T |
41509849 |
agagttgaaggtgttttggtgagtagagatgttggactcagagaccaaactcaacgcttgcagcagaatgttgatatggagagac |
41509765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 16638334 - 16638393
Alignment:
| Q |
213 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
272 |
Q |
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| T |
16638334 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
16638393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 17457304 - 17457245
Alignment:
| Q |
213 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
272 |
Q |
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| T |
17457304 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
17457245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 17595910 - 17595969
Alignment:
| Q |
213 |
cttcaaatggagaaactctcaaggttaaaggctgaggaagagttaaagaaaagagaggaa |
272 |
Q |
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| T |
17595910 |
cttcaaatggagaaacttgcaaggttacatgctgagaaagagtttaagaaaagagaggaa |
17595969 |
T |
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