View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_12 (Length: 343)
Name: NF11547_low_12
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 122 - 325
Target Start/End: Original strand, 28730058 - 28730252
Alignment:
| Q |
122 |
tcatacacaaattgtaagaaaccatgaattgatacatcatacacaagataatctctcaagaaaatctgtaaagactaaatccacaaattgttttattaac |
221 |
Q |
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| T |
28730058 |
tcatacacaaattgtaagaaaccatgaattgatacatcatacacaagataatctc--aagaaaatctgtaaagactaaatccaca-------ttattaac |
28730148 |
T |
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| Q |
222 |
gaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaattcagagttacaattcatgagacaaagaagtgcagcacaaactaa |
321 |
Q |
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| T |
28730149 |
gaactagttaagcaacatagagtatatatggataatagtgtgaattaactacaaattcagagtttcacttcatgagacaaagaagtgcagcacaaactaa |
28730248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28728884 - 28729001
Alignment:
| Q |
1 |
agaaaaatgtccaggaggaaatgtactatgaaatggattgtacttaaactagcatcttctataatcctaggatatctaattcacacacgtattttggccc |
100 |
Q |
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| T |
28728884 |
agaaaaatgaccaggaggaaatgtactatgaaatggattgtacttaaactagcctcttctataatcctagtatatctaattcacacacgtattttggccc |
28728983 |
T |
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| Q |
101 |
tgcagatgaaaaacagat |
118 |
Q |
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| T |
28728984 |
tgcagacgaaaaacagat |
28729001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 38120529 - 38120675
Alignment:
| Q |
177 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |
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| T |
38120529 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactacaaa |
38120626 |
T |
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| Q |
277 |
ttcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaag |
325 |
Q |
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|||| |||| || |||||||||||||||||||||||||||||||||||| |
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| T |
38120627 |
ttcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaag |
38120675 |
T |
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