View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11547_low_13 (Length: 316)
Name: NF11547_low_13
Description: NF11547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11547_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 14616857 - 14616571
Alignment:
| Q |
15 |
agaaacaaacaaaacattacacactcctttaatcacaatctacaaaagcactgacacatggacaccgtggtaatttaaaaagatagtaaagaattgaata |
114 |
Q |
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| T |
14616857 |
agaaacaaacaaaacattacacattcctttaatcacaatctacaaa-gcactgacacatggacaccgtagtaatttaaaaagaaattaaagaattgaata |
14616759 |
T |
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| Q |
115 |
taatctcatgtgtcagtgtcacatcattatgataccggatacgtcttccatcagaagtgt--caatgctatcacagtcaacaaaaataataagaacaa-g |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||| |
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| T |
14616758 |
taatctcatgtgtcagtgtcacatcattatgataccggacacgtcttccatcagaagtgtgcgagtgctatcacaatcaacaaaagtaataagaacaata |
14616659 |
T |
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| Q |
212 |
aaactaaccaattttcggcgctgcgctttgggagaactaaacttcttaacagttttaacaaacgcaataacgaacgtaagacctaaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14616658 |
aaactaaccaattttcggcgctgcgctttgggagaagtaaacttcttaacagttttaacaaacgcaataacgaacgtaagacctaaat |
14616571 |
T |
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